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contig_metadata

35 rows where analysis = "diamond", bioproject = "PRJNA558770" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 35 ✖

tax_kingdom 1

bioproject 1

  • PRJNA558770 · 35 ✖

analysis 1

  • diamond · 35 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12018311 12018311 PRJNA558770_P_NODE_206970_length_234_cov_3.522613_g204965_i0 PRJNA558770 206970 234 3.522613 8.24291442 Anaeromyxobacter sp. 1872521 Bacteria Bacteria 66.2 1.71e-10   NR MBK9518020.1 1872521 g204965 i0 52.1 0.935897435897436 73 30 93.6 1 220 2 287 354 MBK9518020.1 type VI secretion system protein [Anaeromyxobacter sp.] diamond 219 66.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp.
26635684 26635684 PRJNA558770_P_NODE_395041_length_160_cov_3.416000_g393036_i0 PRJNA558770 395041 160 3.416 5.4656 Labilithrix luteola 1391654 Bacteria Bacteria 40.8 0.00666   NR WP_169928561.1 1391654 g393036 i0 51.7 0.54375 29 14 54.4 0 52 138 19 47 WP_169928561.1 hypothetical protein [Labilithrix luteola] diamond 87 40.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26903262 26903262 PRJNA558770_P_NODE_173821_length_234_cov_4.954774_g171816_i0 PRJNA558770 173821 234 4.954774 11.59417116 Myxococcia 32015 Bacteria Bacteria 42.4 0.0443   NR MDB4955996.1 2026763 g171816 i0 79.2 1.53846153846154 24 5 30.8 0 232 161 240 263 MDB4955996.1 cusS [Myxococcales bacterium] diamond 360 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27205080 27205080 PRJNA558770_P_NODE_163462_length_234_cov_5.542714_g161457_i0 PRJNA558770 163462 234 5.542714 12.96995076 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.4 0.00361   NR HBF13544.1 2026735 g161457 i0 80 1.28205128205128 25 5 32.1 0 232 158 168 192 HBF13544.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 300 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27219143 27219143 PRJNA558770_P_NODE_159962_length_234_cov_5.758794_g157957_i0 PRJNA558770 159962 234 5.758794 13.47557796 Bacteria 2 Bacteria Bacteria 41.2 0.0361   NR MCB9520811.1 2026763 g157957 i0 62.5 0.615384615384615 24 9 30.8 0 233 162 59 82 MCB9520811.1 nucleoside triphosphate pyrophosphohydrolase family protein [Myxococcales bacterium] diamond 144 41.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27377728 27377728 PRJNA558770_P_NODE_46203_length_317_cov_3.219858_g44203_i0 PRJNA558770 46203 317 3.219858 10.20694986 Pseudomonadati 3379134 Bacteria Bacteria 59.7 9.22e-8   NR WP_002613323.1 41 g44203 i0 41.4 6.35015772870662 116 41 99.4 3 315 1 167 266 WP_002613323.1 chromate efflux transporter [Stigmatella aurantiaca] diamond 2013 60.1 0.993344425956739 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
28121147 28121147 PRJNA558770_P_NODE_123365_length_234_cov_8.814070_g121360_i0 PRJNA558770 123365 234 8.81407 20.6249238 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52.4 1.25e-5   NR TMB64569.1 2026735 g121360 i0 100 0.307692307692308 24 0 30.8 0 232 161 299 322 TMB64569.1 MAG: hypothetical protein E6J54_27545 [Deltaproteobacteria bacterium] diamond 72 52.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28121175 28121175 PRJNA558770_P_NODE_224465_length_234_cov_2.959799_g222460_i0 PRJNA558770 224465 234 2.959799 6.92592966 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52 1.77e-5   NR MCL5125343.1 2026735 g222460 i0 96 0.961538461538462 25 1 32.1 0 1 75 205 229 MCL5125343.1 alpha/beta fold hydrolase [Deltaproteobacteria bacterium] diamond 225 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28198174 28198174 PRJNA558770_P_NODE_192406_length_234_cov_4.085427_g190401_i0 PRJNA558770 192406 234 4.085427 9.55989918 Bacteria 2 Bacteria Bacteria 43.9 0.0123   NR APR76356.1 888845 g190401 i0 70.8 7.07692307692308 24 7 30.8 0 231 160 40 63 APR76356.1 Methionine ABC transporter ATP-binding protein [Minicystis rosea] diamond 1656 44.3 0.99097065462754 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
28310702 28310702 PRJNA558770_P_NODE_157826_length_234_cov_5.894472_g155821_i0 PRJNA558770 157826 234 5.894472 13.79306448 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47 6.57e-4   NR MCG6879497.1 2026735 g155821 i0 33.8 0.948717948717949 74 28 94.9 1 10 231 2 54 MCG6879497.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Deltaproteobacteria bacterium] diamond 222 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28342211 28342211 PRJNA558770_P_NODE_195006_length_234_cov_3.979899_g193001_i0 PRJNA558770 195006 234 3.979899 9.31296366 Myxococcota bacterium 2818507 Bacteria Bacteria 48.5 2.85e-4   NR MFA6031529.1 2818507 g193001 i0 95.8 1.23076923076923 24 1 30.8 0 3 74 139 162 MFA6031529.1 ATP-binding protein [Myxococcota bacterium] diamond 288 48.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28563327 28563327 PRJNA558770_P_NODE_262487_length_234_cov_2.050251_g260482_i0 PRJNA558770 262487 234 2.050251 4.79758734 Myxococcota bacterium 2818507 Bacteria Bacteria 43.9 0.00958   NR MCK6509185.1 2818507 g260482 i0 84 0.320512820512821 25 4 32.1 0 232 158 130 154 MCK6509185.1 c-type cytochrome [Myxococcota bacterium] diamond 75 43.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28847193 28847193 PRJNA558770_P_NODE_183968_length_234_cov_4.452261_g181963_i0 PRJNA558770 183968 234 4.452261 10.41829074 Myxococcota bacterium 2818507 Bacteria Bacteria 48.5 2.98e-4   NR HON26188.1 2818507 g181963 i0 87.5 0.307692307692308 24 3 30.8 0 233 162 491 514 HON26188.1 hypothetical protein [Myxococcota bacterium] diamond 72 48.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28942348 28942348 PRJNA558770_P_NODE_230208_length_234_cov_2.798995_g228203_i0 PRJNA558770 230208 234 2.798995 6.5496483 Kofleriaceae bacterium 2212474 Bacteria Bacteria 46.2 0.00197   NR MDX2093955.1 2212474 g228203 i0 91.7 0.307692307692308 24 2 30.8 0 75 4 36 59 MDX2093955.1 MFS transporter [Kofleriaceae bacterium] diamond 72 46.2 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28987930 28987930 PRJNA558770_P_NODE_203508_length_234_cov_3.648241_g201503_i0 PRJNA558770 203508 234 3.648241 8.53688394 Myxococcia 32015 Bacteria Bacteria 51.6 2.41e-5   NR OJY28712.1 1895795 g201503 i0 95.8 1.23076923076923 24 1 30.8 0 74 3 97 120 OJY28712.1 MAG: hypothetical protein BGO98_07615 [Myxococcales bacterium 68-20] diamond 288 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium 68-20
29068590 29068590 PRJNA558770_P_NODE_324948_length_233_cov_7.535354_g322943_i0 PRJNA558770 324948 233 7.535354 17.55737482 Archangium violaceum 83451 Bacteria Bacteria 48.1 4.12e-4   NR WP_204221244.1 83451 g322943 i0 70.4 0.347639484978541 27 8 34.8 0 3 83 488 514 WP_204221244.1 PQQ-dependent sugar dehydrogenase [Archangium violaceum] diamond 81 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
29573388 29573388 PRJNA558770_P_NODE_176830_length_234_cov_4.798995_g174825_i0 PRJNA558770 176830 234 4.798995 11.2296483 Pyxidicoccus xibeiensis 2906759 Bacteria Bacteria 44.3 0.00922   NR WP_253983176.1 2906759 g174825 i0 79.2 0.615384615384615 24 5 30.8 0 76 5 50 73 WP_253983176.1 aldehyde dehydrogenase family protein [Pyxidicoccus xibeiensis] diamond 144 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus xibeiensis
29650343 29650343 PRJNA558770_P_NODE_247490_length_234_cov_2.366834_g245485_i0 PRJNA558770 247490 234 2.366834 5.53839156 Bacteria 2 Bacteria Bacteria 43.1 0.0243   NR WP_061611915.1 56 g245485 i0 81.8 2.85897435897436 22 4 28.2 0 67 2 165 186 WP_061611915.1 ribonucleoside-diphosphate reductase subunit alpha [Sorangium cellulosum] diamond 669 43.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
29998302 29998302 PRJNA558770_P_NODE_140211_length_234_cov_7.170854_g138206_i0 PRJNA558770 140211 234 7.170854 16.77979836 Pseudomonadati 3379134 Bacteria Bacteria 43.9 0.0124   NR WP_324959828.1 1872627 g138206 i0 75 0.923076923076923 24 6 30.8 0 6 77 181 204 WP_324959828.1 Kelch repeat-containing protein [Archangium sp.] diamond 216 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
30205002 30205002 PRJNA558770_P_NODE_217152_length_234_cov_3.180905_g215147_i0 PRJNA558770 217152 234 3.180905 7.4433177 Polyangiaceae bacterium 2268199 Bacteria Bacteria 42.4 0.0437   NR NUP13824.1 2268199 g215147 i0 79.2 0.307692307692308 24 5 30.8 0 74 3 168 191 NUP13824.1 DUF5131 family protein [Polyangiaceae bacterium] diamond 72 42.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30219295 30219295 PRJNA558770_P_NODE_281092_length_234_cov_1.718593_g279087_i0 PRJNA558770 281092 234 1.718593 4.02150762 Pseudomonadati 3379134 Bacteria Bacteria 45.4 0.00144   NR MBI4126871.1 2026735 g279087 i0 90 2.1025641025641 20 2 25.6 0 16 75 84 103 MBI4126871.1 RpiB/LacA/LacB family sugar-phosphate isomerase [Deltaproteobacteria bacterium] diamond 492 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30282914 30282914 PRJNA558770_P_NODE_275112_length_234_cov_1.814070_g273107_i0 PRJNA558770 275112 234 1.81407 4.2449238 Pseudomonadati 3379134 Bacteria Bacteria 46.2 0.00196   NR TMB63959.1 2026735 g273107 i0 45.7 1.79487179487179 70 32 89.7 1 212 3 85 148 TMB63959.1 MAG: efflux transporter outer membrane subunit [Deltaproteobacteria bacterium] diamond 420 46.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30503752 30503752 PRJNA558770_P_NODE_155813_length_234_cov_6.025126_g153808_i0 PRJNA558770 155813 234 6.025126 14.09879484 Bacteria 2 Bacteria Bacteria 48.9 1.21e-4   NR MEJ2431467.1 2026735 g153808 i0 88 1.92307692307692 25 3 32.1 0 234 160 81 105 MEJ2431467.1 cobalt-precorrin 5A hydrolase [Deltaproteobacteria bacterium] diamond 450 48.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30503762 30503762 PRJNA558770_P_NODE_259473_length_234_cov_2.105528_g257468_i0 PRJNA558770 259473 234 2.105528 4.92693552 Pseudomonadati 3379134 Bacteria Bacteria 44.7 0.00682   NR MBI3302533.1 2026735 g257468 i0 72 1.19230769230769 25 7 32.1 0 160 234 228 252 MBI3302533.1 methyltransferase [Deltaproteobacteria bacterium] diamond 279 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30615920 30615920 PRJNA558770_P_NODE_248413_length_234_cov_2.341709_g246408_i0 PRJNA558770 248413 234 2.341709 5.47959906 Corallococcus interemptor 2316720 Bacteria Bacteria 45.4 5.22e-4   NR WP_208647468.1 2316720 g246408 i0 73.9 0.294871794871795 23 6 29.5 0 7 75 40 62 WP_208647468.1 hypothetical protein, partial [Corallococcus interemptor] diamond 69 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus interemptor
30932047 30932047 PRJNA558770_P_NODE_241554_length_234_cov_2.502513_g239549_i0 PRJNA558770 241554 234 2.502513 5.85588042 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.2 1.18e-7   NR TMB70139.1 2026735 g239549 i0 38.4 2.53846153846154 99 37 96.2 1 2 226 23 121 TMB70139.1 MAG: fibronectin type III domain-containing protein [Deltaproteobacteria bacterium] diamond 594 58.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31230250 31230250 PRJNA558770_P_NODE_291155_length_234_cov_1.542714_g289150_i0 PRJNA558770 291155 234 1.542714 3.60995076 Corallococcus 83461 Bacteria Bacteria 50.4 6.51e-5   NR WP_207050863.1 35 g289150 i0 100 6.46153846153846 24 0 30.8 0 161 232 11818 11841 WP_207050863.1 non-ribosomal peptide synthetase [Corallococcus macrosporus] diamond 1512 50.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
31342931 31342931 PRJNA558770_P_NODE_278696_length_234_cov_1.753769_g276691_i0 PRJNA558770 278696 234 1.753769 4.10381946 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47.8 5.63e-4   NR MDA8125714.1 2026735 g276691 i0 43.4 2 76 38 91 1 21 233 530 605 MDA8125714.1 autotransporter-associated beta strand repeat-containing protein [Deltaproteobacteria bacterium] diamond 468 47.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31627490 31627490 PRJNA558770_P_NODE_382656_length_206_cov_3.894737_g380651_i0 PRJNA558770 382656 206 3.894737 8.02315822 Labilithrix sp. 1971228 Bacteria Bacteria 77 1.9e-14   NR MBX3232387.1 1971228 g380651 i0 69.6 1.29611650485437 46 14 67 0 205 68 94 139 MBX3232387.1 PAS domain-containing protein [Labilithrix sp.] diamond 267 77 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
32084463 32084463 PRJNA558770_P_NODE_324358_length_233_cov_7.691919_g322353_i0 PRJNA558770 324358 233 7.691919 17.92217127 Pseudomonadati 3379134 Bacteria Bacteria 50.4 5.58e-5   NR HVO21488.1 1872521 g322353 i0 30.7 18.206008583691 101 45 97.9 1 233 6 15 115 HVO21488.1 nucleoside triphosphate pyrophosphohydrolase [Anaeromyxobacter sp.] diamond 4242 50.8 0.992125984251969 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp.
32165520 32165520 PRJNA558770_P_NODE_199878_length_234_cov_3.783920_g197873_i0 PRJNA558770 199878 234 3.78392 8.8543728 Myxococcales bacterium 2026763 Bacteria Bacteria 46.6 1.53e-4   NR MFL5310768.1 2026763 g197873 i0 75 0.307692307692308 24 6 30.8 0 3 74 11 34 MFL5310768.1 hypothetical protein [Myxococcales bacterium] diamond 72 46.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32323919 32323919 PRJNA558770_P_NODE_246299_length_234_cov_2.391960_g244294_i0 PRJNA558770 246299 234 2.39196 5.5971864 Kofleriaceae bacterium 2212474 Bacteria Bacteria 51.2 3.26e-5   NR HTJ47186.1 2212474 g244294 i0 83.3 0.307692307692308 24 4 30.8 0 233 162 100 123 HTJ47186.1 GH1 family beta-glucosidase [Kofleriaceae bacterium] diamond 72 51.2 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32653305 32653305 PRJNA558770_P_NODE_385540_length_193_cov_9.512658_g383535_i0 PRJNA558770 385540 193 9.512658 18.35942994 Pseudomonadati 3379134 Bacteria Bacteria 43.1 0.0117   NR WP_376757429.1 83451 g383535 i0 75 0.715025906735751 24 6 37.3 0 2 73 150 173 WP_376757429.1 hypothetical protein [Archangium violaceum] diamond 138 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
32734204 32734204 PRJNA558770_P_NODE_194980_length_234_cov_3.979899_g192975_i0 PRJNA558770 194980 234 3.979899 9.31296366 Myxococcota bacterium 2818507 Bacteria Bacteria 52 1.82e-5   NR MEE8410280.1 2818507 g192975 i0 36.1 6.44871794871795 83 47 98.7 1 1 231 114 196 MEE8410280.1 dihydrolipoyl dehydrogenase [Myxococcota bacterium] diamond 1509 52 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32828657 32828657 PRJNA558770_P_NODE_94160_length_234_cov_14.015075_g92155_i0 PRJNA558770 94160 234 14.015075 32.7952755 Corallococcus interemptor 2316720 Bacteria Bacteria 45.4 6.22e-4   NR WP_208647454.1 2316720 g92155 i0 91.3 0.294871794871795 23 2 29.5 0 76 8 71 93 WP_208647454.1 hypothetical protein, partial [Corallococcus interemptor] diamond 69 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus interemptor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;