RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA558770" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA558770 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28924397 28924397 PRJNA558770_P_NODE_110948_length_234_cov_10.442211_g108943_i0 PRJNA558770 110948 234 10.442211 24.43477374 Opisthokonta 33154 Mollusca Mollusca 43.9 0.013   NR XP_052097856.1 6549 g108943 i0 83.3 1.53846153846154 24 4 30.8 0 74 3 188 211 XP_052097856.1 C-1-tetrahydrofolate synthase, cytoplasmic-like isoform X1 [Mytilus californianus] diamond 360 43.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
31041083 31041083 PRJNA558770_P_NODE_250715_length_234_cov_2.296482_g248710_i0 PRJNA558770 250715 234 2.296482 5.37376788 Metazoa 33208 Mollusca Mollusca 45.8 0.00273   NR XP_063431364.1 6551 g248710 i0 75 2.14102564102564 24 6 30.8 0 234 163 13 36 XP_063431364.1 transmembrane cell adhesion receptor mua-3-like [Mytilus trossulus] diamond 501 46.2 0.991341991341991 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus trossulus
32038837 32038837 PRJNA558770_P_NODE_380358_length_216_cov_6.961326_g378353_i0 PRJNA558770 380358 216 6.961326 15.03646416 Acanthosepion pharaonis 158019 Mollusca Mollusca 43.1 0.0195   NR CAE1244783.1 158019 g378353 i0 51.4 1 72 28 94.4 4 12 215 497 565 CAE1244783.1 unnamed protein product [Acanthosepion pharaonis] diamond 216 43.1 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Sepiida Sepiidae Acanthosepion Acanthosepion pharaonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;