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contig_metadata

25 rows where analysis = "diamond", bioproject = "PRJNA558770" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA558770 · 25 ✖

analysis 1

  • diamond · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10745956 10745956 PRJNA558770_P_NODE_3889_length_811_cov_21.768041_g2869_i0 PRJNA558770 3889 811 21.768041 176.53881251 Mus musculus 10090 Chordata Chordata 386 3.49e-125   NR NP_031430.2 10090 g2869 i0 58.2 9.29593094944513 359 35 99.9 4 810 1 343 675 NP_031430.2 disintegrin and metalloproteinase domain-containing protein 9 isoform 2 precursor [Mus musculus] diamond 7539 386 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26952222 26952222 PRJNA558770_P_NODE_394542_length_161_cov_12.880952_g392537_i0 PRJNA558770 394542 161 12.880952 20.73833272 Mus musculus 10090 Chordata Chordata 43.1 0.00182   NR EDL00036.1 10090 g392537 i0 66.7 0.559006211180124 30 10 55.9 0 62 151 32 61 EDL00036.1 mCG146956 [Mus musculus] diamond 90 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27521235 27521235 PRJNA558770_P_NODE_347443_length_233_cov_1.853535_g345438_i0 PRJNA558770 347443 233 1.853535 4.31873655 Varanus komodoensis 61221 Chordata Chordata 45.8 0.00274   NR KAF7254327.1 61221 g345438 i0 79.2 1.51931330472103 24 5 30.9 0 160 231 162 185 KAF7254327.1 Tudor domain-containing protein 1 [Varanus komodoensis] diamond 354 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
27552592 27552592 PRJNA558770_P_NODE_114864_length_234_cov_9.884422_g112859_i0 PRJNA558770 114864 234 9.884422 23.12954748 Cricetulus griseus 10029 Chordata Chordata 54.3 2.26e-6   NR XP_035300100.1 10029 g112859 i0 60.5 0.974358974358974 76 8 97.4 1 233 6 57 110 XP_035300100.1 uncharacterized protein LOC118238741 [Cricetulus griseus] diamond 228 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
27931724 27931724 PRJNA558770_P_NODE_139165_length_234_cov_7.261307_g137160_i0 PRJNA558770 139165 234 7.261307 16.99145838 Bos mutus 72004 Chordata Chordata 49.3 1.61e-4   NR MXQ87451.1 72004 g137160 i0 96 0.320512820512821 25 1 32.1 0 2 76 174 198 MXQ87451.1 hypothetical protein [Bos mutus] diamond 75 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
27963303 27963303 PRJNA558770_P_NODE_268585_length_234_cov_1.934673_g266580_i0 PRJNA558770 268585 234 1.934673 4.52713482 Engystomops pustulosus 76066 Chordata Chordata 44.7 0.00169   NR KAG8571038.1 76066 g266580 i0 79.2 5.84615384615385 24 5 30.8 0 73 2 14 37 KAG8571038.1 hypothetical protein GDO81_011511 [Engystomops pustulosus] diamond 1368 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28121208 28121208 PRJNA558770_P_NODE_392945_length_166_cov_14.351145_g390940_i0 PRJNA558770 392945 166 14.351145 23.8229007 Mus musculus 10090 Chordata Chordata 57 7.08e-8   NR BAE33644.1 10090 g390940 i0 62.3 0.957831325301205 53 20 95.8 0 2 160 131 183 BAE33644.1 unnamed protein product, partial [Mus musculus] diamond 159 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28184113 28184113 PRJNA558770_P_NODE_292766_length_234_cov_1.497487_g290761_i0 PRJNA558770 292766 234 1.497487 3.50411958 Engystomops pustulosus 76066 Chordata Chordata 45.1 0.00511   NR KAG8571490.1 76066 g290761 i0 75 19.3846153846154 24 6 30.8 0 74 3 1134 1157 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 4536 45.4 0.993392070484582 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28292973 28292973 PRJNA558770_P_NODE_223926_length_234_cov_2.979899_g221921_i0 PRJNA558770 223926 234 2.979899 6.97296366 Aves 8782 Chordata Chordata 42.4 0.0419   NR KQL33115.1 12930 g221921 i0 72 2.56410256410256 25 7 32.1 0 76 2 254 278 KQL33115.1 hypothetical protein AAES_29678 [Amazona aestiva] diamond 600 42.7 0.992974238875878 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Amazona Amazona aestiva
28373681 28373681 PRJNA558770_P_NODE_161886_length_234_cov_5.643216_g159881_i0 PRJNA558770 161886 234 5.643216 13.20512544 Grus japonensis 30415 Chordata Chordata 50.4 3.14e-5   NR GAB0193063.1 30415 g159881 i0 38 1.83333333333333 71 37 91 1 7 219 22 85 GAB0193063.1 cAMP-dependent protein kinase inhibitor alpha [Grus japonensis] diamond 429 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
28437093 28437093 PRJNA558770_P_NODE_392506_length_168_cov_3.120301_g390501_i0 PRJNA558770 392506 168 3.120301 5.24210568 Staurois parvus 386267 Chordata Chordata 73.6 3.06e-15   NR CAI9547784.1 386267 g390501 i0 57.4 1.92857142857143 54 23 96.4 0 162 1 6 59 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 324 73.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28910260 28910260 PRJNA558770_P_NODE_78068_length_236_cov_2.810945_g76063_i0 PRJNA558770 78068 236 2.810945 6.6338302 Mauremys mutica 74926 Chordata Chordata 50.4 2.05e-5   NR KAH1176600.1 74926 g76063 i0 52.6 0.851694915254237 38 18 48.3 0 31 144 98 135 KAH1176600.1 hypothetical protein KIL84_010302, partial [Mauremys mutica] diamond 201 50.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys mutica
29478595 29478595 PRJNA558770_P_NODE_244310_length_234_cov_2.437186_g242305_i0 PRJNA558770 244310 234 2.437186 5.70301524 Scyliorhinus canicula 7830 Chordata Chordata 43.5 0.0127   NR XP_038659988.1 7830 g242305 i0 89.5 0.756410256410256 19 2 24.4 0 219 163 101 119 XP_038659988.1 glutaredoxin-like protein C5orf63 homolog isoform X2 [Scyliorhinus canicula] diamond 177 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
29573378 29573378 PRJNA558770_P_NODE_133070_length_234_cov_7.819095_g131065_i0 PRJNA558770 133070 234 7.819095 18.2966823 Muntiacus muntjak 9888 Chordata Chordata 46.6 8.44e-4   NR KAB0337909.1 9888 g131065 i0 87.5 0.615384615384615 24 3 30.8 0 2 73 151 174 KAB0337909.1 hypothetical protein FD754_024923, partial [Muntiacus muntjak] diamond 144 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
29699470 29699470 PRJNA558770_P_NODE_265790_length_234_cov_1.984925_g263785_i0 PRJNA558770 265790 234 1.984925 4.6447245 Crocuta crocuta 9678 Chordata Chordata 47 3.87e-4   NR KAF0886930.1 9678 g263785 i0 90 1.11538461538462 20 2 25.6 0 74 15 14 33 KAF0886930.1 LORF2 protein, partial [Crocuta crocuta] diamond 261 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
30314639 30314639 PRJNA558770_P_NODE_315292_length_233_cov_10.353535_g313287_i0 PRJNA558770 315292 233 10.353535 24.12373655 Mammalia 40674 Chordata Chordata 45.4 0.00355   NR XP_049562359.1 9733 g313287 i0 37.6 5.39484978540773 101 35 94 2 222 4 179 279 XP_049562359.1 protein farnesyltransferase subunit beta isoform X3 [Orcinus orca] diamond 1257 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Orcinus Orcinus orca
31121161 31121161 PRJNA558770_P_NODE_122535_length_234_cov_8.909548_g120530_i0 PRJNA558770 122535 234 8.909548 20.84834232 Loxodonta africana 9785 Chordata Chordata 44.7 0.00696   NR XP_064145590.1 9785 g120530 i0 79.2 0.307692307692308 24 5 30.8 0 3 74 888 911 XP_064145590.1 LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 42 [Loxodonta africana] diamond 72 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
31215948 31215948 PRJNA558770_P_NODE_247795_length_234_cov_2.356784_g245790_i0 PRJNA558770 247795 234 2.356784 5.51487456 Charadrius vociferus 50402 Chordata Chordata 52.4 1.38e-5   NR XP_009883999.1 50402 g245790 i0 91.7 0.307692307692308 24 2 30.8 0 4 75 412 435 XP_009883999.1 PREDICTED: uncharacterized protein LOC104287046, partial [Charadrius vociferus] diamond 72 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
31374675 31374675 PRJNA558770_P_NODE_393436_length_165_cov_2.738462_g391431_i0 PRJNA558770 393436 165 2.738462 4.5184623 Prionailurus viverrinus 61388 Chordata Chordata 72 6.06e-13   NR XP_047697379.1 61388 g391431 i0 94.3 0.636363636363636 35 2 63.6 0 105 1 326 360 XP_047697379.1 interleukin enhancer-binding factor 2 isoform X2 [Prionailurus viverrinus] diamond 105 72 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Prionailurus Prionailurus viverrinus
31469553 31469553 PRJNA558770_P_NODE_193116_length_234_cov_4.055276_g191111_i0 PRJNA558770 193116 234 4.055276 9.48934584 Tinamus guttatus 94827 Chordata Chordata 52.8 9.85e-6   NR XP_010212325.1 94827 g191111 i0 96 0.320512820512821 25 1 32.1 0 234 160 142 166 XP_010212325.1 PREDICTED: uncharacterized protein LOC104567219, partial [Tinamus guttatus] diamond 75 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
31532818 31532818 PRJNA558770_P_NODE_151436_length_234_cov_6.316583_g149431_i0 PRJNA558770 151436 234 6.316583 14.78080422 Kogia breviceps 27615 Chordata Chordata 49.3 1.67e-4   NR XP_066867270.1 27615 g149431 i0 88 0.320512820512821 25 3 32.1 0 234 160 699 723 XP_066867270.1 constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X4 [Kogia breviceps] diamond 75 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Kogia Kogia breviceps
31564540 31564540 PRJNA558770_P_NODE_247616_length_234_cov_2.361809_g245611_i0 PRJNA558770 247616 234 2.361809 5.52663306 Staurois parvus 386267 Chordata Chordata 58.2 8.11e-9   NR CAI9547784.1 386267 g245611 i0 38.5 1 78 46 97.4 1 229 2 11 88 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 234 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31848932 31848932 PRJNA558770_P_NODE_362317_length_232_cov_5.446701_g360312_i0 PRJNA558770 362317 232 5.446701 12.63634632 Ovis aries 9940 Chordata Chordata 57.4 4.37e-8   NR KAG5207521.1 9940 g360312 i0 100 0.310344827586207 24 0 31 0 73 2 118 141 KAG5207521.1 hypothetical protein JEQ12_017285 [Ovis aries] diamond 72 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
32545305 32545305 PRJNA558770_P_NODE_379959_length_218_cov_3.207650_g377954_i0 PRJNA558770 379959 218 3.20765 6.992677 Equus caballus 9796 Chordata Chordata 43.1 0.0197   NR XP_070092295.1 9796 g377954 i0 42.7 1.12844036697248 82 34 95 5 4 210 446 527 XP_070092295.1 paired box protein Pax-8 isoform X2 [Equus caballus] diamond 246 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
32734197 32734197 PRJNA558770_P_NODE_178240_length_234_cov_4.728643_g176235_i0 PRJNA558770 178240 234 4.728643 11.06502462 Bos taurus 9913 Chordata Chordata 52.4 1.3e-5   NR DAA19446.1 9913 g176235 i0 91.7 0.307692307692308 24 2 30.8 0 161 232 116 139 DAA19446.1 TPA: repressor transcriptional factor-like [Bos taurus] diamond 72 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;