RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA558770" and tax_phylum = "Candidatus Liptoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Liptoniibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA558770 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29226530 29226530 PRJNA558770_P_NODE_222909_length_234_cov_3.010050_g220904_i0 PRJNA558770 222909 234 3.01005 7.043517 Candidatus Liptonbacteria bacterium 2528273 Bacteria Bacteria 45.4 0.00365   NR MFH0890866.1 2528273 g220904 i0 76 0.320512820512821 25 6 32.1 0 75 1 157 181 MFH0890866.1 P1 family peptidase [Candidatus Liptonbacteria bacterium] diamond 75 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium
31848890 31848890 PRJNA558770_P_NODE_182517_length_234_cov_4.527638_g180512_i0 PRJNA558770 182517 234 4.527638 10.59467292 Candidatus Liptonbacteria bacterium 2528273 Bacteria Bacteria 42.7 0.0343   NR MBI4084972.1 2528273 g180512 i0 72 0.320512820512821 25 7 32.1 0 1 75 638 662 MBI4084972.1 ATP-dependent DNA helicase RecG [Candidatus Liptonbacteria bacterium] diamond 75 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;