RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA558770" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA558770 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26794166 26794166 PRJNA558770_P_NODE_329161_length_233_cov_6.459596_g327156_i0 PRJNA558770 329161 233 6.459596 15.05085868 Chestnut mosaic virus 2781948 Viruses Viruses 51.6 2.51e-5   NR YP_010800602.1 2781948 g327156 i0 84 0.321888412017167 25 4 32.2 0 232 158 1220 1244 YP_010800602.1 polyprotein [Chestnut mosaic virus] diamond 75 51.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus tessellocastaneae
31279517 31279517 PRJNA558770_P_NODE_332615_length_233_cov_5.580808_g330610_i0 PRJNA558770 332615 233 5.580808 13.00328264 Gulupa bacilliform virus A 2910932 Viruses Viruses 44.7 0.00706   NR USH10133.1 2910932 g330610 i0 79.2 0.309012875536481 24 5 30.9 0 76 5 99 122 USH10133.1 ORF3 [Gulupa bacilliform virus A] diamond 72 44.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Gulupa bacilliform virus A
31912228 31912228 PRJNA558770_P_NODE_241937_length_234_cov_2.492462_g239932_i0 PRJNA558770 241937 234 2.492462 5.83236108 Hibiscus soymovirus 3023608 Viruses Viruses 44.3 0.00921   NR WPF45136.1 3023608 g239932 i0 79.2 0.307692307692308 24 5 30.8 0 74 3 125 148 WPF45136.1 transactivation protein [Hibiscus soymovirus] diamond 72 44.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Soymovirus Soymovirus hibisci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;