RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA558770" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA558770 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9468523 9468523 PRJNA558770_P_NODE_243188_length_234_cov_2.462312_g241183_i0 PRJNA558770 243188 234 2.462312 5.76181008 Bacteria 2 Bacteria Bacteria 55.8 7.8e-7   NR OGP70013.1 1797826 g241183 i0 96 2.24358974358974 25 1 32.1 0 234 160 172 196 OGP70013.1 MAG: ABC transporter permease [Deltaproteobacteria bacterium RBG_13_47_9] diamond 525 55.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_47_9
26681331 26681331 PRJNA558770_P_NODE_128841_length_234_cov_8.231156_g126836_i0 PRJNA558770 128841 234 8.231156 19.26090504 Pseudomonadati 3379134 Bacteria Bacteria 54.7 1.83e-6   NR PIX21374.1 1973962 g126836 i0 95.8 4.92307692307692 24 1 30.8 0 232 161 113 136 PIX21374.1 MAG: acetyl-CoA C-acyltransferase, partial [Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9] diamond 1152 54.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9
28198192 28198192 PRJNA558770_P_NODE_305946_length_233_cov_14.176768_g303941_i0 PRJNA558770 305946 233 14.176768 33.03186944 Bacillota 1239 Bacteria Bacteria 50.1 7.93e-5   NR MDL2259910.1 2885211 g303941 i0 96 1.28755364806867 25 1 32.2 0 76 2 203 227 MDL2259910.1 ABC transporter ATP-binding protein [Deltaproteobacteria bacterium OttesenSCG-928-K17] diamond 300 50.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium OttesenSCG-928-K17
32038828 32038828 PRJNA558770_P_NODE_304198_length_233_cov_15.222222_g302193_i0 PRJNA558770 304198 233 15.222222 35.46777726 Deltaproteobacteria bacterium RBG_16_48_1 2026735 Bacteria Bacteria 50.4 6.17e-5   NR OGP90591.1 1797839 g302193 i0 100 0.321888412017167 25 0 32.2 0 3 77 407 431 OGP90591.1 MAG: NADH dehydrogenase [Deltaproteobacteria bacterium RBG_16_48_10] diamond 75 50.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_48_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;