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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA557895" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557895 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9465155 9465155 PRJNA557895_P_NODE_9988_length_288_cov_1.610879_g9633_i0 PRJNA557895 9988 288 1.610879 4.63933152 Mesorhabditis belari 2138241 Nematoda Nematoda 161 4.1999999999999995e-44   NR CAJ0941556.1 2138241 g9633 i0 84.4 39.4791666666667 90 14 93.8 0 11 280 11 100 CAJ0941556.1 unnamed protein product, partial [Mesorhabditis belari] diamond 11370 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
17114058 17114058 PRJNA557895_P_NODE_3614_length_505_cov_1.989035_g3269_i0 PRJNA557895 3614 505 1.989035 10.04462675 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 234 1.07e-75   NR NP_001367325.1 6239 g3269 i0 72.8 437.952475247525 151 41 89.7 0 3 455 31 181 NP_001367325.1 ADP-ribosylation factor 1-like 2 [Caenorhabditis elegans] diamond 221166 236 0.991525423728814 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18387696 18387696 PRJNA557895_P_NODE_13335_length_253_cov_1.975490_g12980_i0 PRJNA557895 13335 253 1.97549 4.9979897 Meloidogyne enterolobii 390850 Nematoda Nematoda 157 6.95e-44   NR CAD2126524.1 390850 g12980 i0 89.3 576.664031620553 84 9 99.6 0 2 253 178 261 CAD2126524.1 unnamed protein product [Meloidogyne enterolobii] diamond 145896 157 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
20938531 20938531 PRJNA557895_P_NODE_7897_length_318_cov_1.873606_g7542_i0 PRJNA557895 7897 318 1.873606 5.95806708 Metazoa 33208 Nematoda Nematoda 175 7.7199999999999995e-53   NR VDK67687.1 6269 g7542 i0 80.2 61 106 21 100 0 1 318 133 238 VDK67687.1 unnamed protein product [Anisakis simplex] diamond 19398 175 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
28152919 28152919 PRJNA557895_P_NODE_9485_length_294_cov_1.248980_g9130_i0 PRJNA557895 9485 294 1.24898 3.6720012 Pristionchus entomophagus 358040 Nematoda Nematoda 77 6.78e-15   NR GMS98491.1 358040 g9130 i0 41.4 2.68367346938776 87 47 84.7 2 290 42 117 203 GMS98491.1 hypothetical protein PENTCL1PPCAC_20666, partial [Pristionchus entomophagus] diamond 789 77 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
28577218 28577218 PRJNA557895_P_NODE_10207_length_286_cov_0.860759_g9852_i0 PRJNA557895 10207 286 0.860759 2.46177074 Opisthokonta 33154 Nematoda Nematoda 56.6 8.05e-7   NR KHJ45755.1 68888 g9852 i0 75.7 8.15034965034965 37 9 38.8 0 258 148 292 328 KHJ45755.1 26S proteasome subunit P45 family protein [Trichuris suis] diamond 2331 57 0.992982456140351 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
29051028 29051028 PRJNA557895_P_NODE_32688_length_165_cov_0.879310_g32333_i0 PRJNA557895 32688 165 0.87931 1.4508615 Opisthokonta 33154 Nematoda Nematoda 42 0.0243   NR CAD2166874.1 390850 g32333 i0 60.9 5.16363636363636 23 9 41.8 0 95 163 479 501 CAD2166874.1 unnamed protein product [Meloidogyne enterolobii] diamond 852 42.4 0.990566037735849 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
29257548 29257548 PRJNA557895_P_NODE_13049_length_256_cov_1.251208_g12694_i0 PRJNA557895 13049 256 1.251208 3.20309248 Trichinella zimbabwensis 268475 Nematoda Nematoda 49.7 8.91e-5   NR KRZ00650.1 268475 g12694 i0 38.3 1.59375 81 49 94.9 1 1 243 111 190 KRZ00650.1 hypothetical protein T11_4116 [Trichinella zimbabwensis] diamond 408 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella zimbabwensis
29366680 29366680 PRJNA557895_P_NODE_38549_length_161_cov_0.910714_g38194_i0 PRJNA557895 38549 161 0.910714 1.46624954 Trichinella 6333 Nematoda Nematoda 65.1 1.59e-10   NR KRZ95624.1 92180 g38194 i0 52.8 17.776397515528 53 25 98.8 0 160 2 753 805 KRZ95624.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella sp. T8] diamond 2862 65.5 0.993893129770992 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T8
29541847 29541847 PRJNA557895_P_NODE_1910_length_769_cov_1.554167_g1605_i0 PRJNA557895 1910 769 1.554167 11.95154423 Trichuris suis 68888 Nematoda Nematoda 206 2.34e-58   NR KFD51397.1 68888 g1605 i0 39.8 8.98439531859558 256 154 99.9 0 2 769 327 582 KFD51397.1 hypothetical protein M513_07802 [Trichuris suis] diamond 6909 206 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
29776947 29776947 PRJNA557895_P_NODE_25291_length_184_cov_1.133333_g24936_i0 PRJNA557895 25291 184 1.133333 2.08533272 Meloidogyne 189290 Nematoda Nematoda 53.9 1.96e-6   NR KAF7633111.1 189291 g24936 i0 38.1 6 63 36 99.5 2 1 183 444 505 KAF7633111.1 Aminopeptidase [Meloidogyne graminicola] diamond 1104 54.3 0.992633517495396 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
30173559 30173559 PRJNA557895_P_NODE_1852_length_786_cov_1.476255_g1550_i0 PRJNA557895 1852 786 1.476255 11.6033643 Trichuris suis 68888 Nematoda Nematoda 73.2 1.46e-10   NR KHJ39859.1 68888 g1550 i0 47.5 1.30152671755725 59 31 22.5 0 432 256 666 724 KHJ39859.1 integrase core domain protein [Trichuris suis] diamond 1023 73.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30236834 30236834 PRJNA557895_P_NODE_30232_length_167_cov_0.864407_g29877_i0 PRJNA557895 30232 167 0.864407 1.44355969 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 79 2.29e-15   NR KAE9548360.1 2598192 g29877 i0 67.3 4.94011976047904 55 18 98.8 0 165 1 426 480 KAE9548360.1 hypothetical protein FO519_008427 [Halicephalobus sp. NKZ332] diamond 825 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
30900482 30900482 PRJNA557895_P_NODE_39314_length_160_cov_3.432432_g38959_i0 PRJNA557895 39314 160 3.432432 5.4918912 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 54.3 7.68e-7   NR CAD5220209.1 6326 g38959 i0 50 0.9375 50 25 93.8 0 160 11 40 89 CAD5220209.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 150 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
31279437 31279437 PRJNA557895_P_NODE_24835_length_186_cov_1.014599_g24480_i0 PRJNA557895 24835 186 1.014599 1.88715414 Gnathostoma spinigerum 75299 Nematoda Nematoda 63.9 5.95e-10   NR MFH4974472.1 75299 g24480 i0 61.2 0.790322580645161 49 19 79 0 168 22 257 305 MFH4974472.1 hypothetical protein [Gnathostoma spinigerum] diamond 147 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
32323859 32323859 PRJNA557895_P_NODE_20439_length_205_cov_1.660256_g20084_i0 PRJNA557895 20439 205 1.660256 3.4035248 Caenorhabditis angaria 860376 Nematoda Nematoda 63.2 1.46e-9   NR CAI5455806.1 860376 g20084 i0 44.3 1.02439024390244 70 36 99.5 2 205 2 19 87 CAI5455806.1 unnamed protein product [Caenorhabditis angaria] diamond 210 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
32513647 32513647 PRJNA557895_P_NODE_16779_length_225_cov_0.829545_g16424_i0 PRJNA557895 16779 225 0.829545 1.86647625 Cercopithifilaria johnstoni 2874296 Nematoda Nematoda 48.1 3.84e-4   NR CAG9535345.1 2874296 g16424 i0 48.9 0.6 45 22 58.7 1 70 201 45 89 CAG9535345.1 unnamed protein product [Cercopithifilaria johnstoni] diamond 135 48.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Cercopithifilaria Cercopithifilaria johnstoni
32576734 32576734 PRJNA557895_P_NODE_12719_length_259_cov_1.814286_g12364_i0 PRJNA557895 12719 259 1.814286 4.69900074 Trichuris suis 68888 Nematoda Nematoda 70.9 5.84e-12   NR KFD64270.1 68888 g12364 i0 41.3 3.70656370656371 80 47 92.7 0 258 19 626 705 KFD64270.1 LOW QUALITY PROTEIN: hypothetical protein M514_12712 [Trichuris suis] diamond 960 70.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32873943 32873943 PRJNA557895_P_NODE_5160_length_399_cov_2.037143_g4805_i0 PRJNA557895 5160 399 2.037143 8.12820057 Metazoa 33208 Nematoda Nematoda 124 1.31e-33   NR CDW53287.1 36087 g4805 i0 59 13.3984962406015 100 41 75.2 0 359 60 16 115 CDW53287.1 Ribosomal L31e domain containing protein [Trichuris trichiura] diamond 5346 124 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;