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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA557895" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557895 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26903258 26903258 PRJNA557895_P_NODE_16501_length_226_cov_1.717514_g16146_i0 PRJNA557895 16501 226 1.717514 3.88158164 Pseudomonadati 3379134 Bacteria Bacteria 72.8 6.77e-13   NR HAY32653.1 1898104 g16146 i0 66.7 3.58407079646018 54 18 71.7 0 162 1 1 54 HAY32653.1 acetyl-CoA C-acetyltransferase [Bacteroidota bacterium] diamond 810 73.2 0.994535519125683 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28292959 28292959 PRJNA557895_P_NODE_25846_length_181_cov_2.318182_g25491_i0 PRJNA557895 25846 181 2.318182 4.19590942 Pseudomonadati 3379134 Bacteria Bacteria 86.3 6.22e-18   NR MBK7570623.1 1898104 g25491 i0 65 14.4530386740331 60 21 99.4 0 1 180 8 67 MBK7570623.1 adenosylhomocysteinase [Bacteroidota bacterium] diamond 2616 87 0.991954022988506 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28468640 28468640 PRJNA557895_P_NODE_18486_length_215_cov_0.921687_g18131_i0 PRJNA557895 18486 215 0.921687 1.98162705 Saprospiraceae bacterium 2202734 Bacteria Bacteria 42 0.0493   NR NOT37954.1 2202734 g18131 i0 31.1 0.851162790697674 61 35 75.3 1 50 211 577 637 NOT37954.1 hypothetical protein [Saprospiraceae bacterium] diamond 183 42 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae   Saprospiraceae bacterium
29903504 29903504 PRJNA557895_P_NODE_35611_length_163_cov_0.894737_g35256_i0 PRJNA557895 35611 163 0.894737 1.45842131 Moheibacter 1572763 Bacteria Bacteria 79 2.11e-16   NR WP_354510936.1 1628251 g35256 i0 66 3.86503067484663 53 18 97.5 0 162 4 118 170 WP_354510936.1 porin family protein [Moheibacter stercoris] diamond 630 79.3 0.996216897856242 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Moheibacter Moheibacter stercoris
30141623 30141623 PRJNA557895_P_NODE_24512_length_187_cov_1.108696_g24157_i0 PRJNA557895 24512 187 1.108696 2.07326152 Flavobacterium sp. 239 Bacteria Bacteria 41.6 0.0435   NR MDK2772804.1 239 g24157 i0 44.4 0.72192513368984 45 23 72.2 1 42 176 32 74 MDK2772804.1 hypothetical protein [Flavobacterium sp.] diamond 135 41.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
31437630 31437630 PRJNA557895_P_NODE_23056_length_193_cov_1.416667_g22701_i0 PRJNA557895 23056 193 1.416667 2.73416731 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 43.1 0.0132   NR RYG34286.1 1869212 g22701 i0 40 0.77720207253886 50 29 77.7 1 26 175 131 179 RYG34286.1 MAG: RNA methyltransferase [Chitinophagaceae bacterium] diamond 150 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
31658937 31658937 PRJNA557895_P_NODE_36077_length_163_cov_0.894737_g35722_i0 PRJNA557895 36077 163 0.894737 1.45842131 Salibacteraceae bacterium 2832350 Bacteria Bacteria 45.1 0.00188   NR MFT6441495.1 2832350 g35722 i0 44.4 1.71165644171779 45 25 82.8 0 143 9 364 408 MFT6441495.1 gliding motility-associated-like protein [Salibacteraceae bacterium] diamond 279 45.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Salibacteraceae   Salibacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;