RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA557895" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557895 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28310689 28310689 PRJNA557895_P_NODE_7746_length_321_cov_3.264706_g7391_i0 PRJNA557895 7746 321 3.264706 10.47970626 Actinomycetota bacterium 2900548 Bacteria Bacteria 45.1 0.0131   NR HEX2058595.1 2900548 g7391 i0 40.3 1.69158878504673 77 40 72 3 24 254 319 389 HEX2058595.1 phosphopentomutase [Actinomycetota bacterium] diamond 543 45.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29510260 29510260 PRJNA557895_P_NODE_29310_length_168_cov_1.705882_g28955_i0 PRJNA557895 29310 168 1.705882 2.86588176 Nesterenkonia alkaliphila 1463631 Bacteria Bacteria 54.3 9.29e-8   NR MVT25828.1 1463631 g28955 i0 50 0.821428571428571 46 23 82.1 0 30 167 21 66 MVT25828.1 NINE protein [Nesterenkonia alkaliphila] diamond 138 54.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia alkaliphila
32323878 32323878 PRJNA557895_P_NODE_7599_length_324_cov_1.854545_g7244_i0 PRJNA557895 7599 324 1.854545 6.0087258 Tessaracoccus massiliensis 1522311 Bacteria Bacteria 45.4 0.00997   NR WP_040282227.1 1522311 g7244 i0 39.7 0.583333333333333 63 38 58.3 0 2 190 110 172 WP_040282227.1 acetyl-CoA C-acetyltransferase [Tessaracoccus massiliensis] diamond 189 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus massiliensis
32702416 32702416 PRJNA557895_P_NODE_25300_length_184_cov_1.125926_g24945_i0 PRJNA557895 25300 184 1.125926 2.07170384 Actinocrinis sp. 1920516 Bacteria Bacteria 49.3 8.42e-5   NR HEV2636352.1 1920516 g24945 i0 41.5 2.73913043478261 53 30 86.4 1 184 26 652 703 HEV2636352.1 PKD domain-containing protein [Actinocrinis sp.] diamond 504 49.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Catenulisporales Actinospicaceae Actinocrinis Actinocrinis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;