RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA557895" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA557895 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17113621 17113621 PRJNA557895_P_NODE_16814_length_224_cov_1.702857_g16459_i0 PRJNA557895 16814 224 1.702857 3.81439968 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 121 3.2699999999999995e-31   NR XP_003294737.1 5786 g16459 i0 77 72.3482142857143 74 17 99.1 0 222 1 31 104 XP_003294737.1 pyruvate dehydrogenase E1 beta subunit [Dictyostelium purpureum] diamond 16206 122 0.991803278688525 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
28247278 28247278 PRJNA557895_P_NODE_30706_length_167_cov_0.864407_g30351_i0 PRJNA557895 30706 167 0.864407 1.44355969 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 47.8 2.24e-4   NR KAH3759439.1 1580589 g30351 i0 34 1.81437125748503 53 35 95.2 0 5 163 197 249 KAH3759439.1 actin-binding protein, cofilin/tropomyosin family protein [Pelomyxa schiedti] diamond 303 47.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29447035 29447035 PRJNA557895_P_NODE_34610_length_164_cov_0.886957_g34255_i0 PRJNA557895 34610 164 0.886957 1.45460948 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 41.6 0.0335   NR XP_004367881.1 1257118 g34255 i0 42.1 0.695121951219512 38 22 69.5 0 163 50 569 606 XP_004367881.1 neuroblastomaamplified protein, putative [Acanthamoeba castellanii str. Neff] diamond 114 41.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;