RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA557436" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557436 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28089451 28089451 PRJNA557436_S_NODE_4125_length_197_cov_2.530864_g4077_i0 PRJNA557436 4125 197 2.530864 4.98580208 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 54.3 1.68e-6   NR CAI9150999.1 3082113 g4077 i0 96.6 0.441624365482233 29 1 44.2 0 1 87 501 529 CAI9150999.1 unnamed protein product, partial [Rangifer tarandus platyrhynchus] diamond 87 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
32527709 32527709 PRJNA557436_S_NODE_3519_length_209_cov_5.051724_g3471_i0 PRJNA557436 3519 209 5.051724 10.55810316 Artiodactyla 91561 Chordata Chordata 47.4 5.67e-4   NR XP_069396403.1 9728 g3471 i0 70.3 2.32535885167464 37 10 53.1 1 140 30 115 150 XP_069396403.1 collagen alpha-1(I) chain-like, partial [Delphinus delphis] diamond 486 47.8 0.99163179916318 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Delphinus Delphinus delphis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;