RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA557436" and tax_phylum = "Candidatus Berkelbacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA557436 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26698790 26698790 PRJNA557436_S_NODE_2321_length_249_cov_1.448598_g2273_i0 PRJNA557436 2321 249 1.448598 3.60700902 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 45.8 0.00337   NR MCR4307425.1 2053521 g2273 i0 84 0.301204819277108 25 4 30.1 0 150 224 1854 1878 MCR4307425.1 right-handed parallel beta-helix repeat-containing protein [Candidatus Berkelbacteria bacterium] diamond 75 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium
30678964 30678964 PRJNA557436_S_NODE_6413_length_169_cov_1.552239_g6365_i0 PRJNA557436 6413 169 1.552239 2.62328391 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 107 2.08e-25   NR MCR4307145.1 2053521 g6365 i0 85.2 2.87573964497041 54 8 95.9 0 164 3 136 189 MCR4307145.1 hypothetical protein [Candidatus Berkelbacteria bacterium] diamond 486 107 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;