RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA557436" and tax_phylum = "Arthropoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557436 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29226452 29226452 PRJNA557436_S_NODE_4729_length_187_cov_2.440789_g4681_i0 PRJNA557436 4729 187 2.440789 4.56427543 Pararge aegeria aegeria 348720 Arthropoda Arthropoda 40.8 0.0333   NR CAH2246697.1 348720 g4681 i0 32.3 0.994652406417112 62 39 94.7 1 10 186 38 99 CAH2246697.1 jg3536 [Pararge aegeria aegeria] diamond 186 40.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Nymphalidae Pararge Pararge aegeria
31135252 31135252 PRJNA557436_S_NODE_6375_length_169_cov_2.074627_g6327_i0 PRJNA557436 6375 169 2.074627 3.50611963 root 1 Root_unresolved Root_unresolved 70.5 2.19e-12   NR KOC58562.1 597456 g6327 i0 61.1 5.48520710059172 54 21 95.9 0 3 164 915 968 KOC58562.1 Uncharacterized protein yejH [Habropoda laboriosa] diamond 927 70.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Apidae Habropoda Habropoda laboriosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;