RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA557436" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA557436 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28247240 28247240 PRJNA557436_S_NODE_2306_length_249_cov_2.658879_g2258_i0 PRJNA557436 2306 249 2.658879 6.62060871 Meiothermus sp. 1955249 Bacteria Bacteria 98.6 1.39e-22   NR HEU4742827.1 1955249 g2258 i0 56.8 0.975903614457831 81 35 97.6 0 2 244 105 185 HEU4742827.1 UV DNA damage repair endonuclease UvsE [Meiothermus sp.] diamond 243 98.6 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.
28310665 28310665 PRJNA557436_S_NODE_946_length_369_cov_2.913174_g898_i0 PRJNA557436 946 369 2.913174 10.74961206 Synergistetes bacterium ADurb.BinA166 1852916 Bacteria Bacteria 162 2.69e-45   NR OPZ36153.1 1852916 g898 i0 65.8 1.89430894308943 111 37 90.2 1 367 35 76 185 OPZ36153.1 MAG: Shoulder domain protein [Synergistetes bacterium ADurb.BinA166] diamond 699 162 1 Bacteria   Thermotogati Synergistota         Synergistetes bacterium ADurb.BinA166
29636300 29636300 PRJNA557436_S_NODE_8110_length_157_cov_1.303279_g8062_i0 PRJNA557436 8110 157 1.303279 2.04614803 Synergistaceae bacterium 2053624 Bacteria Bacteria 55.1 2.32e-7   NR MBQ3625713.1 2053624 g8062 i0 54.5 0.840764331210191 44 20 84.1 0 143 12 27 70 MBQ3625713.1 PD-(D/E)XK nuclease-like domain-containing protein [Synergistaceae bacterium] diamond 132 55.1 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30124310 30124310 PRJNA557436_S_NODE_6432_length_169_cov_1.365672_g6384_i0 PRJNA557436 6432 169 1.365672 2.30798568 Deinococcus 1298 Bacteria Bacteria 56.2 2.17e-7   NR WP_368773369.1 1298 g6384 i0 53.8 2.78698224852071 52 24 92.3 0 169 14 238 289 WP_368773369.1 MULTISPECIES: endonuclease domain-containing protein [Deinococcus] diamond 471 56.2 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;