RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA557436" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 4 ✖

bioproject 1

  • PRJNA557436 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26762260 26762260 PRJNA557436_S_NODE_6321_length_170_cov_1.237037_g6273_i0 PRJNA557436 6321 170 1.237037 2.1029629 Acer saccharum 4024 Plants Plants 66.2 6.89e-11   NR KAK1548203.1 4024 g6273 i0 48.2 2.82352941176471 56 29 98.8 0 170 3 142 197 KAK1548203.1 hypothetical protein Q3G72_018492 [Acer saccharum] diamond 480 66.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer saccharum
27805548 27805548 PRJNA557436_S_NODE_4144_length_197_cov_1.790123_g4096_i0 PRJNA557436 4144 197 1.790123 3.52654231 Acer saccharum 4024 Plants Plants 107 2.39e-25   NR KAK1548911.1 4024 g4096 i0 72.3 0.989847715736041 65 18 99 0 3 197 193 257 KAK1548911.1 hypothetical protein Q3G72_019842 [Acer saccharum] diamond 195 107 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer saccharum
29289251 29289251 PRJNA557436_S_NODE_2349_length_247_cov_2.547170_g2301_i0 PRJNA557436 2349 247 2.54717 6.2915099 Sphagnum balticum 128184 Plants Plants 128 8.4e-34   NR CAM5998727.1 128184 g2301 i0 70 2.8663967611336 80 24 97.2 0 242 3 236 315 CAM5998727.1 unnamed protein product [Sphagnum balticum] diamond 708 128 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum balticum
29618800 29618800 PRJNA557436_S_NODE_5910_length_174_cov_1.143885_g5862_i0 PRJNA557436 5910 174 1.143885 1.9903599 root 1 Root_unresolved Root_unresolved 63.5 6.56e-10   NR KAF3334543.1 544730 g5862 i0 52.9 2.62068965517241 51 24 87.9 0 2 154 273 323 KAF3334543.1 methyl-CpG-binding domain protein 4 [Carex littledalei] diamond 456 63.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;