RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA556992" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24752831 24752831 PRJNA556992_P_NODE_279900_length_293_cov_1.845455_g277711_i0 PRJNA556992 279900 293 1.845455 5.40718315 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 157 1.0399999999999997e-42   NR AKT93967.1 5778 g277711 i0 89.8 1.80204778156997 88 9 90.1 0 1 264 395 482 AKT93967.1 NADH dehydrogenase subunit 5 [Vermamoeba vermiformis] diamond 528 157 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31722204 31722204 PRJNA556992_P_NODE_866237_length_242_cov_3.502959_g864047_i0 PRJNA556992 866237 242 3.502959 8.47716078 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 120 5.55e-32   NR ABD46545.1 5778 g864047 i0 96.6 0.731404958677686 59 2 73.1 0 65 241 138 196 ABD46545.1 aldehyde dehydrogenase, partial [Vermamoeba vermiformis] diamond 177 120 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32133630 32133630 PRJNA556992_P_NODE_772638_length_247_cov_2.741379_g770448_i0 PRJNA556992 772638 247 2.741379 6.77120613 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 145 1.03e-42   NR AKT93944.1 5778 g770448 i0 84.1 1.9919028340081 82 13 99.6 0 247 2 33 114 AKT93944.1 ribosomal protein S8 [Vermamoeba vermiformis] diamond 492 145 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;