RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA556992" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA556992 · 19 ✖

analysis 1

  • diamond · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27363106 27363106 PRJNA556992_P_NODE_1170043_length_197_cov_4.935484_g1167852_i0 PRJNA556992 1170043 197 4.935484 9.72290348 Thermoproteota archaeon 2056631 Archaea Archaea 127 1.6399999999999999e-34   NR MDP9016182.1 2056631 g1167852 i0 95.4 2.96954314720812 65 3 99 0 195 1 105 169 MDP9016182.1 alpha/beta hydrolase [Thermoproteota archaeon] diamond 585 127 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27742385 27742385 PRJNA556992_P_NODE_741544_length_249_cov_1.312500_g739355_i0 PRJNA556992 741544 249 1.3125 3.268125 Thermoproteota archaeon 2056631 Archaea Archaea 140 2.5099999999999993e-40   NR MDP8906734.1 2056631 g739355 i0 84.1 0.987951807228916 82 13 98.8 0 2 247 26 107 MDP8906734.1 hypothetical protein [Thermoproteota archaeon] diamond 246 140 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27836788 27836788 PRJNA556992_P_NODE_979664_length_232_cov_5.742138_g977474_i0 PRJNA556992 979664 232 5.742138 13.32176016 Thermoproteota archaeon 2056631 Archaea Archaea 149 2.2199999999999998e-42   NR MDP9305990.1 2056631 g977474 i0 96.1 0.995689655172414 77 3 99.6 0 2 232 70 146 MDP9305990.1 PfkB family carbohydrate kinase [Thermoproteota archaeon] diamond 231 149 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28215281 28215281 PRJNA556992_P_NODE_487866_length_268_cov_2.353846_g485677_i0 PRJNA556992 487866 268 2.353846 6.30830728 Thermoprotei archaeon 2250277 Archaea Archaea 97.1 2.01e-21   NR RLG76926.1 2250277 g485677 i0 53.4 0.985074626865672 88 41 98.5 0 268 5 55 142 RLG76926.1 MAG: hypothetical protein DRO14_03075, partial [Thermoprotei archaeon] diamond 264 97.1 1 Archaea   Thermoproteati Thermoproteota Thermoprotei       Thermoprotei archaeon
28499625 28499625 PRJNA556992_P_NODE_1111287_length_210_cov_4.919708_g1109096_i0 PRJNA556992 1111287 210 4.919708 10.3313868 Thermoproteota archaeon 2056631 Archaea Archaea 144 1.13e-42   NR MDI9578610.1 2056631 g1109096 i0 100 0.985714285714286 69 0 98.6 0 209 3 49 117 MDI9578610.1 hypothetical protein [Thermoproteota archaeon] diamond 207 144 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28531239 28531239 PRJNA556992_P_NODE_1133867_length_205_cov_4.840909_g1131676_i0 PRJNA556992 1133867 205 4.840909 9.92386345 Crenarchaeota archaeon 13_1_4 2056631 Archaea Archaea 42 0.0405   NR OLD05705.1 1805098 g1131676 i0 51.3 0.570731707317073 39 18 55.6 1 119 6 37 75 OLD05705.1 MAG: hypothetical protein AUJ07_00945 [Crenarchaeota archaeon 13_1_40CM_3_53_5] diamond 117 42 1 Archaea   Thermoproteati Thermoproteota         Crenarchaeota archaeon 13_1_40CM_3_53_5
28577214 28577214 PRJNA556992_P_NODE_99667_length_405_cov_6.620482_g97483_i0 PRJNA556992 99667 405 6.620482 26.8129521 root 1 Root_unresolved Root_unresolved 267 1.26e-89   NR MCY0882245.1 12915 g97483 i0 98.5 1.98518518518519 134 2 99.3 0 404 3 27 160 MCY0882245.1 topoisomerase C-terminal repeat-containing protein [Acidianus infernus] diamond 804 267 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus infernus
29478019 29478019 PRJNA556992_P_NODE_136570_length_368_cov_4.149153_g134383_i0 PRJNA556992 136570 368 4.149153 15.26888304 Desulfurococcales archaeon 2480821 Archaea Archaea 57 1.63e-6   NR MCE4609558.1 2480821 g134383 i0 46.9 0.521739130434783 64 31 52.2 2 204 13 572 632 MCE4609558.1 carboxypeptidase regulatory-like domain-containing protein [Desulfurococcales archaeon] diamond 192 57 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales     Desulfurococcales archaeon
30363457 30363457 PRJNA556992_P_NODE_743092_length_249_cov_0.875000_g740903_i0 PRJNA556992 743092 249 0.875 2.17875 Thermoproteota archaeon 2056631 Archaea Archaea 121 5.919999999999999e-32   NR MDP8887454.1 2056631 g740903 i0 100 0.746987951807229 62 0 74.7 0 188 3 1 62 MDP8887454.1 CbtA family protein [Thermoproteota archaeon] diamond 186 121 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30787988 30787988 PRJNA556992_P_NODE_313454_length_287_cov_1.313084_g311265_i0 PRJNA556992 313454 287 1.313084 3.76855108 Thermoproteati 1783275 Archaea Archaea 81.3 1.58e-15   NR WP_081246112.1 1650659 g311265 i0 46 6.39721254355401 87 47 90.9 0 26 286 15 101 WP_081246112.1 translation elongation factor EF-1 subunit alpha [Thermoproteus sp. CP80] diamond 1836 81.3 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus sp. CP80
31405679 31405679 PRJNA556992_P_NODE_1123516_length_207_cov_6.037313_g1121325_i0 PRJNA556992 1123516 207 6.037313 12.49723791 Thermoproteota archaeon 2056631 Archaea Archaea 128 2.45e-33   NR MDQ3947548.1 2056631 g1121325 i0 91.2 0.985507246376812 68 6 98.6 0 206 3 49 116 MDQ3947548.1 arginine--tRNA ligase [Thermoproteota archaeon] diamond 204 128 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31595950 31595950 PRJNA556992_P_NODE_795076_length_246_cov_1.976879_g792886_i0 PRJNA556992 795076 246 1.976879 4.86312234 Candidatus Methanomethylicus sp. 2282147 Archaea Archaea 43.1 0.0277   NR HPC28503.1 2282147 g792886 i0 63 0.329268292682927 27 10 32.9 0 4 84 232 258 HPC28503.1 LMBR1 domain-containing protein [Candidatus Methanomethylicus sp.] diamond 81 43.1 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae Candidatus Methanomethylicus Candidatus Methanomethylicus sp.
31627345 31627345 PRJNA556992_P_NODE_931736_length_237_cov_5.073171_g929546_i0 PRJNA556992 931736 237 5.073171 12.02341527 Thermoproteota archaeon 2056631 Archaea Archaea 137 2.06e-39   NR MDQ3852155.1 2056631 g929546 i0 97.1 0.873417721518987 69 2 87.3 0 207 1 1 69 MDQ3852155.1 nuclear transport factor 2 family protein [Thermoproteota archaeon] diamond 207 137 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31957711 31957711 PRJNA556992_P_NODE_1006117_length_230_cov_2.388535_g1003927_i0 PRJNA556992 1006117 230 2.388535 5.4936305 Thermoproteati 1783275 Archaea Archaea 158 1.76e-44   NR MDQ4012850.1 2056631 g1003927 i0 98.7 2.97391304347826 76 1 99.1 0 230 3 277 352 MDQ4012850.1 PQQ-dependent sugar dehydrogenase [Thermoproteota archaeon] diamond 684 158 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32070178 32070178 PRJNA556992_P_NODE_71258_length_451_cov_2.997354_g69083_i0 PRJNA556992 71258 451 2.997354 13.51806654 Thermoproteota archaeon 2056631 Archaea Archaea 89.4 2.05e-18   NR HDI86197.1 2056631 g69083 i0 31.4 0.931263858093126 140 95 92.5 1 1 417 110 249 HDI86197.1 hypothetical protein [Thermoproteota archaeon] diamond 420 89.4 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32133235 32133235 PRJNA556992_P_NODE_1083698_length_216_cov_7.818182_g1081507_i0 PRJNA556992 1083698 216 7.818182 16.88727312 Thermoproteota archaeon 2056631 Archaea Archaea 127 4.29e-36   NR MDQ5863538.1 2056631 g1081507 i0 87.3 0.986111111111111 71 9 98.6 0 2 214 23 93 MDQ5863538.1 hypothetical protein [Thermoproteota archaeon] diamond 213 127 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32147758 32147758 PRJNA556992_P_NODE_674418_length_253_cov_1.655556_g672229_i0 PRJNA556992 674418 253 1.655556 4.18855668 Thermoproteati 1783275 Archaea Archaea 50.1 1.03e-4   NR MDQ3903596.1 2056631 g672229 i0 53.7 2.4901185770751 41 18 47.4 1 2 121 264 304 MDQ3903596.1 PQQ-dependent sugar dehydrogenase [Thermoproteota archaeon] diamond 630 50.4 0.994047619047619 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32386684 32386684 PRJNA556992_P_NODE_876799_length_242_cov_0.911243_g874609_i0 PRJNA556992 876799 242 0.911243 2.20520806 Desulfurococcales archaeon 2480821 Archaea Archaea 43.9 0.014   NR MDT7895234.1 2480821 g874609 i0 38.9 0.892561983471074 72 38 88 3 17 229 304 370 MDT7895234.1 N-6 DNA methylase [Desulfurococcales archaeon] diamond 216 43.9 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales     Desulfurococcales archaeon
32670400 32670400 PRJNA556992_P_NODE_1131220_length_205_cov_9.545455_g1129029_i0 PRJNA556992 1131220 205 9.545455 19.56818275 Thermoproteota archaeon 2056631 Archaea Archaea 53.5 1.06e-6   NR RLG44328.1 2056631 g1129029 i0 43.3 0.980487804878049 67 38 98 0 202 2 18 84 RLG44328.1 MAG: hypothetical protein DRN81_04790 [Thermoproteota archaeon] diamond 201 53.5 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;