RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA556992" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28973731 28973731 PRJNA556992_P_NODE_987288_length_232_cov_2.238994_g985098_i0 PRJNA556992 987288 232 2.238994 5.19446608 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 50.4 6.23e-5   NR MES1910244.1 1215613 g985098 i0 48.9 0.607758620689655 47 24 60.8 0 92 232 471 517 MES1910244.1 hypothetical protein [Cercozoa sp. M6MM] diamond 141 50.4 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29036664 29036664 PRJNA556992_P_NODE_455268_length_271_cov_2.171717_g453079_i0 PRJNA556992 455268 271 2.171717 5.88535307 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 107 9.33e-25   NR MES1907663.1 1215613 g453079 i0 62.5 1.06273062730627 96 29 98.5 2 269 3 521 616 MES1907663.1 hypothetical protein [Cercozoa sp. M6MM] diamond 288 107 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31374385 31374385 PRJNA556992_P_NODE_694996_length_251_cov_2.831461_g692807_i0 PRJNA556992 694996 251 2.831461 7.10696711 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 50.4 7.9e-5   NR MES1911702.1 1215613 g692807 i0 53.5 0.51394422310757 43 20 51.4 0 210 82 52 94 MES1911702.1 hypothetical protein [Cercozoa sp. M6MM] diamond 129 50.4 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
32513116 32513116 PRJNA556992_P_NODE_1078799_length_217_cov_13.673611_g1076608_i0 PRJNA556992 1078799 217 13.673611 29.67173587 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 92.4 1.21e-21   NR AAY21202.1 227086 g1076608 i0 70 1.65898617511521 60 17 82.9 1 183 4 16 74 AAY21202.1 Rpl7A, partial [Bigelowiella natans] diamond 360 92.4 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;