RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA556992" and tax_phylum = "Candidatus Uhriibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Uhriibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28261297 28261297 PRJNA556992_P_NODE_948146_length_236_cov_2.312883_g945956_i0 PRJNA556992 948146 236 2.312883 5.45840388 Bacteria 2 Bacteria Bacteria 74.7 5.91e-14   NR MDP2629917.1 2053634 g945956 i0 78.3 3.78813559322034 46 10 58.5 0 139 2 15 60 MDP2629917.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA [Candidatus Uhrbacteria bacterium] diamond 894 74.7 1 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium
29952346 29952346 PRJNA556992_P_NODE_797091_length_246_cov_1.647399_g794901_i0 PRJNA556992 797091 246 1.647399 4.05260154 Candidatus Uhrbacteria bacterium 2053634 Bacteria Bacteria 97.4 8.28e-23   NR MCR4312177.1 2053634 g794901 i0 49.4 0.98780487804878 81 41 98.8 0 244 2 134 214 MCR4312177.1 peptidoglycan DD-metalloendopeptidase family protein [Candidatus Uhrbacteria bacterium] diamond 243 97.4 1 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium
30219202 30219202 PRJNA556992_P_NODE_355112_length_281_cov_3.567308_g352923_i0 PRJNA556992 355112 281 3.567308 10.02413548 Bacteria 2 Bacteria Bacteria 76.3 8.95e-14   NR OGL78705.1 1802397 g352923 i0 45.8 2.50889679715302 83 45 88.6 0 279 31 61 143 OGL78705.1 MAG: deoxyribodipyrimidine photolyase [Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_12_FULL_54_23] diamond 705 77 0.990909090909091 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_12_FULL_54_23
30868588 30868588 PRJNA556992_P_NODE_957434_length_235_cov_2.413580_g955244_i0 PRJNA556992 957434 235 2.41358 5.671913 Candidatus Uhrbacteria bacterium 2053634 Bacteria Bacteria 65.9 2.29e-10   NR MBI2483152.1 2053634 g955244 i0 50.7 0.957446808510638 75 37 95.7 0 234 10 206 280 MBI2483152.1 hypothetical protein [Candidatus Uhrbacteria bacterium] diamond 225 65.9 1 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;