RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA556992" and tax_phylum = "Candidatus Methanomethylicota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methanomethylicota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA556992 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26952009 26952009 PRJNA556992_P_NODE_835682_length_244_cov_1.573099_g833492_i0 PRJNA556992 835682 244 1.573099 3.83836156 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 93.2 8.68e-21   NR MEM4406019.1 3058293 g833492 i0 53.8 0.983606557377049 80 37 98.4 0 5 244 189 268 MEM4406019.1 hypothetical protein [Candidatus Methanomethylicaceae archaeon] diamond 240 93.2 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
30520949 30520949 PRJNA556992_P_NODE_643913_length_255_cov_2.873626_g641724_i0 PRJNA556992 643913 255 2.873626 7.3277463 Candidatus Methanomethylicota archaeon 2056631 Archaea Archaea 49.3 1.09e-4   NR NHV45943.1 2250257 g641724 i0 34.3 2.63529411764706 70 45 82.4 1 6 215 31 99 NHV45943.1 hypothetical protein [Candidatus Methanomethylicota archaeon] diamond 672 49.3 1 Archaea   Thermoproteati Candidatus Methanomethylicota         Candidatus Methanomethylicota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;