RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA556992" and tax_phylum = "Candidatus Lindowiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Lindowiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29730822 29730822 PRJNA556992_P_NODE_434690_length_273_cov_2.020000_g432501_i0 PRJNA556992 434690 273 2.02 5.5146 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 1817870 Bacteria Bacteria 64.7 9.93e-10   NR OGH60592.1 1817870 g432501 i0 48.5 4.06593406593407 68 25 65.9 2 1 180 364 429 OGH60592.1 MAG: restriction endonuclease subunit S [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27] diamond 1110 64.7 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;