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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA556992" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 16 ✖

bioproject 1

  • PRJNA556992 · 16 ✖

analysis 1

  • diamond · 16 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9463844 9463844 PRJNA556992_P_NODE_966288_length_234_cov_2.602484_g964098_i0 PRJNA556992 966288 234 2.602484 6.08981256 uncultured delta proteobacterium 34034 Bacteria Bacteria 129 3.83e-34   NR BAL56290.1 34034 g964098 i0 82.1 1 78 14 100 0 234 1 19 96 BAL56290.1 glycosyl transferase family protein [uncultured delta proteobacterium] diamond 234 129 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
26793853 26793853 PRJNA556992_P_NODE_603121_length_258_cov_4.756757_g600932_i0 PRJNA556992 603121 258 4.756757 12.27243306 Persicimonas sp. 2766932 Bacteria Bacteria 89.4 1.66e-18   NR MFP4597940.1 2766932 g600932 i0 67.5 0.965116279069767 83 27 96.5 0 6 254 199 281 MFP4597940.1 putative metal-binding motif-containing protein [Persicimonas sp.] diamond 249 89.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.
27552160 27552160 PRJNA556992_P_NODE_298684_length_289_cov_1.425926_g296495_i0 PRJNA556992 298684 289 1.425926 4.12092614 Deltaproteobacteria bacterium SG8_13 1703398 Bacteria Bacteria 97.1 5.72e-21   NR KPJ75957.1 1703398 g296495 i0 51 2.96885813148789 96 47 99.7 0 2 289 532 627 KPJ75957.1 MAG: hypothetical protein AMJ54_13385, partial [Deltaproteobacteria bacterium SG8_13] diamond 858 97.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium SG8_13
27630118 27630118 PRJNA556992_P_NODE_384884_length_278_cov_1.975610_g382695_i0 PRJNA556992 384884 278 1.97561 5.4921958 Myxococcota 2818505 Bacteria Bacteria 81.6 1.18e-15   NR OGQ17351.1 1797848 g382695 i0 46.7 6.99280575539568 92 45 99.3 3 1 276 592 679 OGQ17351.1 MAG: hypothetical protein A2138_25550 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 1944 82.4 0.990291262135922 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12
27882558 27882558 PRJNA556992_P_NODE_880045_length_242_cov_0.911243_g877855_i0 PRJNA556992 880045 242 0.911243 2.20520806 Lujinxingia 2653226 Bacteria Bacteria 54.3 2.96e-6   NR WP_111727865.1 2211119 g877855 i0 61.5 1.42561983471074 39 15 48.3 0 111 227 1 39 WP_111727865.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Lujinxingia litoralis] diamond 345 54.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia litoralis
28215186 28215186 PRJNA556992_P_NODE_328486_length_285_cov_1.259434_g326297_i0 PRJNA556992 328486 285 1.259434 3.5893869 Deltaproteobacteria bacterium RIFCSPHIGHO2_ 2026735 Bacteria Bacteria 51.6 4.86e-5   NR OGQ14870.1 1797858 g326297 i0 37.8 0.778947368421053 74 46 77.9 0 279 58 694 767 OGQ14870.1 MAG: hypothetical protein A3B70_08410 [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_11] diamond 222 51.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_11
28577154 28577154 PRJNA556992_P_NODE_423547_length_274_cov_2.194030_g421358_i0 PRJNA556992 423547 274 2.19403 6.0116422 Bacteria 2 Bacteria Bacteria 122 4.639999999999999e-32   NR OGQ80199.1 1797895 g421358 i0 61.1 14.6277372262774 90 35 98.5 0 4 273 115 204 OGQ80199.1 MAG: mechanosensitive ion channel protein [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 4008 123 0.991869918699187 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
28721051 28721051 PRJNA556992_P_NODE_937987_length_237_cov_2.426829_g935797_i0 PRJNA556992 937987 237 2.426829 5.75158473 Persicimonas caeni 2292766 Bacteria Bacteria 84.7 5.64e-17   NR WP_141197512.1 2292766 g935797 i0 54.5 0.974683544303797 77 35 97.5 0 236 6 109 185 WP_141197512.1 1-acyl-sn-glycerol-3-phosphate acyltransferase [Persicimonas caeni] diamond 231 84.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
29099411 29099411 PRJNA556992_P_NODE_1007188_length_229_cov_16.461538_g1004998_i0 PRJNA556992 1007188 229 16.461538 37.69692202 SAR324 cluster bacterium 2024889 Bacteria Bacteria 79 8.92e-16   NR MCH2286936.1 2024889 g1004998 i0 56.1 4.31004366812227 66 29 86.5 0 1 198 155 220 MCH2286936.1 leucyl/phenylalanyl-tRNA--protein transferase [SAR324 cluster bacterium] diamond 987 79 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30300119 30300119 PRJNA556992_P_NODE_404352_length_276_cov_1.926108_g402163_i0 PRJNA556992 404352 276 1.926108 5.31605808 Persicimonas caeni 2292766 Bacteria Bacteria 55.1 1.83e-6   NR WP_141199512.1 2292766 g402163 i0 59 0.423913043478261 39 16 42.4 0 2 118 222 260 WP_141199512.1 carbonic anhydrase family protein [Persicimonas caeni] diamond 117 55.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
30346158 30346158 PRJNA556992_P_NODE_419092_length_274_cov_8.935323_g416903_i0 PRJNA556992 419092 274 8.935323 24.48278502 root 1 Root_unresolved Root_unresolved 96.7 1.94e-22   NR PCI29252.1 2024889 g416903 i0 54 6.72262773722628 87 31 95.3 1 266 6 77 154 PCI29252.1 MAG: 7-cyano-7-deazaguanine synthase QueC [SAR324 cluster bacterium] diamond 1842 96.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30615378 30615378 PRJNA556992_P_NODE_140513_length_365_cov_3.219178_g138325_i0 PRJNA556992 140513 365 3.219178 11.7499997 Deltaproteobacteria bacterium RIFOXYA12_FULL_61_11 1797896 Bacteria Bacteria 138 3.76e-35   NR OGR01519.1 1797896 g138325 i0 55.4 0.994520547945206 121 53 99.5 1 365 3 351 470 OGR01519.1 MAG: hypothetical protein A2284_05785 [Deltaproteobacteria bacterium RIFOXYA12_FULL_61_11] diamond 363 138 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_61_11
31215446 31215446 PRJNA556992_P_NODE_24675_length_687_cov_2.959283_g22655_i0 PRJNA556992 24675 687 2.959283 20.33027421 SAR324 cluster bacterium 2024889 Bacteria Bacteria 112 1.6e-26   NR PCI29252.1 2024889 g22655 i0 72.7 0.2882096069869 66 18 28.8 0 4 201 154 219 PCI29252.1 MAG: 7-cyano-7-deazaguanine synthase QueC [SAR324 cluster bacterium] diamond 198 112 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
31451922 31451922 PRJNA556992_P_NODE_782276_length_247_cov_0.885057_g780086_i0 PRJNA556992 782276 247 0.885057 2.18609079 Myxococcota 2818505 Bacteria Bacteria 42.7 0.0379   NR NMC63309.1 2024889 g780086 i0 38.5 1.1417004048583 65 39 77.7 1 245 54 470 534 NMC63309.1 glycosyltransferase [SAR324 cluster bacterium] diamond 282 42.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
32355272 32355272 PRJNA556992_P_NODE_86539_length_424_cov_1.128205_g84358_i0 PRJNA556992 86539 424 1.128205 4.7835892 SAR324 cluster bacterium 2024889 Bacteria Bacteria 71.6 2.12e-11   NR MDP7139559.1 2024889 g84358 i0 36.8 2.65330188679245 144 67 96.9 6 421 11 433 559 MDP7139559.1 SBBP repeat-containing protein [SAR324 cluster bacterium] diamond 1125 71.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
32432608 32432608 PRJNA556992_P_NODE_432499_length_273_cov_2.710000_g430310_i0 PRJNA556992 432499 273 2.71 7.3983 Thermodesulfobacteriota 200940 Bacteria Bacteria 50.8 5.37e-5   NR OPZ54396.1 1852871 g430310 i0 35 1.75824175824176 80 51 87.9 1 273 34 149 227 OPZ54396.1 MAG: hypothetical protein BWY90_00088 [Deltaproteobacteria bacterium ADurb.BinA014] diamond 480 50.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.BinA014

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;