RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA556992" and tax_clade = "Methanomada group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 18 ✖

bioproject 1

  • PRJNA556992 · 18 ✖

analysis 1

  • diamond · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18387254 18387254 PRJNA556992_P_NODE_973715_length_233_cov_3.331250_g971525_i0 PRJNA556992 973715 233 3.33125 7.7618125 Methanobrevibacter woesei 190976 Archaea Archaea 152 6.73e-41   NR WP_346674977.1 190976 g971525 i0 100 0.991416309012876 77 0 99.1 0 3 233 23 99 WP_346674977.1 glycosyltransferase family 2 protein [Methanobrevibacter woesei] diamond 231 152 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter woesei
22208457 22208457 PRJNA556992_P_NODE_651538_length_255_cov_1.115385_g649349_i0 PRJNA556992 651538 255 1.115385 2.84423175 Methanobrevibacter 2172 Archaea Archaea 103 8.769999999999999e-25   NR WP_083234819.1 2172 g649349 i0 92.9 1.31764705882353 56 4 65.9 0 255 88 232 287 WP_083234819.1 MULTISPECIES: succinate--CoA ligase subunit alpha [Methanobrevibacter] diamond 336 103 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter  
26603451 26603451 PRJNA556992_P_NODE_425061_length_274_cov_1.870647_g422872_i0 PRJNA556992 425061 274 1.870647 5.12557278 Methanobrevibacter sp. 66852 Archaea Archaea 67.8 8.23e-11   NR MBO7716606.1 66852 g422872 i0 41.3 0.875912408759124 80 47 87.6 0 242 3 442 521 MBO7716606.1 hypothetical protein [Methanobrevibacter sp.] diamond 240 67.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28468545 28468545 PRJNA556992_P_NODE_883406_length_241_cov_4.875000_g881216_i0 PRJNA556992 883406 241 4.875 11.74875 Methanobacterium sp. 2164 Archaea Archaea 144 7.63e-40   NR HEY0196223.1 2164 g881216 i0 94.9 1.96680497925311 79 4 98.3 0 239 3 197 275 HEY0196223.1 glycosyltransferase family 2 protein [Methanobacterium sp.] diamond 474 144 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
28545918 28545918 PRJNA556992_P_NODE_979107_length_232_cov_6.729560_g976917_i0 PRJNA556992 979107 232 6.72956 15.6125792 root 1 Root_unresolved Root_unresolved 47.4 7.9e-4   NR WP_281774102.1 2162 g976917 i0 44.4 6.23275862068965 63 28 81.5 2 231 43 2252 2307 WP_281774102.1 DUF3344 domain-containing protein, partial [Methanobacterium formicicum] diamond 1446 47.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
28657914 28657914 PRJNA556992_P_NODE_881327_length_242_cov_0.905325_g879137_i0 PRJNA556992 881327 242 0.905325 2.1908865 Methanobrevibacter sp. 66852 Archaea Archaea 146 4.9799999999999997e-39   NR WP_405323806.1 66852 g879137 i0 97.5 0.991735537190083 80 2 99.2 0 242 3 30 109 WP_405323806.1 right-handed parallel beta-helix repeat-containing protein [Methanobrevibacter sp.] diamond 240 146 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29005044 29005044 PRJNA556992_P_NODE_1031448_length_227_cov_3.480519_g1029258_i0 PRJNA556992 1031448 227 3.480519 7.90077813 Methanofervidicoccus sp. A16 2607662 Archaea Archaea 114 1.66e-28   NR WP_148120023.1 2607662 g1029258 i0 73 3.91189427312775 74 20 97.8 0 223 2 230 303 WP_148120023.1 GDP-mannose 4,6-dehydratase [Methanofervidicoccus sp. A16] diamond 888 114 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales   Methanofervidicoccus Methanofervidicoccus sp. A16
29005102 29005102 PRJNA556992_P_NODE_1120748_length_208_cov_4.511111_g1118557_i0 PRJNA556992 1120748 208 4.511111 9.38311088 Methanobacterium sp. PtaU1.Bin 2164 Archaea Archaea 98.6 1.32e-24   NR OPY24548.1 1811675 g1118557 i0 95.7 0.663461538461538 46 2 66.3 0 69 206 1 46 OPY24548.1 MAG: Superoxide reductase [Methanobacterium sp. PtaU1.Bin097] diamond 138 98.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
29257297 29257297 PRJNA556992_P_NODE_528149_length_265_cov_1.317708_g525960_i0 PRJNA556992 528149 265 1.317708 3.4919262 Methanobrevibacter sp. 66852 Archaea Archaea 181 3.2999999999999994e-56   NR WP_407463451.1 66852 g525960 i0 98.9 2.98867924528302 88 1 99.6 0 265 2 53 140 WP_407463451.1 FAD-binding protein, partial [Methanobrevibacter sp.] diamond 792 181 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29335011 29335011 PRJNA556992_P_NODE_655069_length_254_cov_3.425414_g652880_i0 PRJNA556992 655069 254 3.425414 8.70055156 Methanobacteriaceae 2159 Archaea Archaea 156 6.329999999999999e-46   NR MBR6023592.1 66852 g652880 i0 88.1 7.93700787401575 84 10 99.2 0 254 3 91 174 MBR6023592.1 AMP-binding protein [Methanobrevibacter sp.] diamond 2016 156 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29415431 29415431 PRJNA556992_P_NODE_863149_length_242_cov_5.857988_g860959_i0 PRJNA556992 863149 242 5.857988 14.17633096 Methanobacterium sp. 2164 Archaea Archaea 56.6 4.65e-7   NR MEN6294173.1 2164 g860959 i0 37.3 0.830578512396694 67 42 83.1 0 240 40 174 240 MEN6294173.1 hypothetical protein [Methanobacterium sp.] diamond 201 56.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29857150 29857150 PRJNA556992_P_NODE_1110571_length_210_cov_5.532847_g1108380_i0 PRJNA556992 1110571 210 5.532847 11.6189787 Methanobrevibacter sp. 66852 Archaea Archaea 90.9 2.7e-19   NR MBR1610416.1 66852 g1108380 i0 58.8 0.971428571428571 68 28 97.1 0 210 7 469 536 MBR1610416.1 polysaccharide deacetylase family protein [Methanobrevibacter sp.] diamond 204 90.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30773653 30773653 PRJNA556992_P_NODE_235314_length_310_cov_3.080169_g233126_i0 PRJNA556992 235314 310 3.080169 9.5485239 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 99.4 1.11e-21   NR WP_295614222.1 253161 g233126 i0 100 2.37096774193548 49 0 47.4 0 308 162 2044 2092 WP_295614222.1 AMP-binding protein, partial [uncultured Methanobrevibacter sp.] diamond 735 99.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
31135202 31135202 PRJNA556992_P_NODE_547875_length_263_cov_2.073684_g545686_i0 PRJNA556992 547875 263 2.073684 5.45378892 Methanobrevibacter 2172 Archaea Archaea 115 7.700000000000001e-28   NR WP_292787076.1 66852 g545686 i0 94.8 1.32319391634981 58 3 66.2 0 176 3 1 58 WP_292787076.1 ABC transporter ATP-binding protein [Methanobrevibacter sp.] diamond 348 116 0.991379310344828 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31753560 31753560 PRJNA556992_P_NODE_329277_length_285_cov_1.122642_g327088_i0 PRJNA556992 329277 285 1.122642 3.1995297 Methanobacteriales archaeon HGW-Methanobacteriales-1 2013815 Archaea Archaea 48.9 4.27e-4   NR PKL67475.1 2013815 g327088 i0 41.2 3.38947368421053 85 47 86.3 2 249 4 1 85 PKL67475.1 MAG: hypothetical protein CVV28_06355 [Methanobacteriales archaeon HGW-Methanobacteriales-1] diamond 966 48.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales     Methanobacteriales archaeon HGW-Methanobacteriales-1
32355175 32355175 PRJNA556992_P_NODE_661059_length_254_cov_1.701657_g658870_i0 PRJNA556992 661059 254 1.701657 4.32220878 Methanobrevibacter sp. 66852 Archaea Archaea 162 4.52e-49   NR WP_292788576.1 66852 g658870 i0 98.8 0.992125984251969 84 1 99.2 0 3 254 76 159 WP_292788576.1 SseB family protein [Methanobrevibacter sp.] diamond 252 162 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32828423 32828423 PRJNA556992_P_NODE_851600_length_243_cov_2.229412_g849410_i0 PRJNA556992 851600 243 2.229412 5.41747116 Methanobrevibacter sp. 66852 Archaea Archaea 55.5 1.21e-6   NR MBO7714342.1 66852 g849410 i0 40.8 0.938271604938272 76 45 93.8 0 232 5 122 197 MBO7714342.1 hypothetical protein [Methanobrevibacter sp.] diamond 228 55.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32828487 32828487 PRJNA556992_P_NODE_952940_length_235_cov_3.808642_g950750_i0 PRJNA556992 952940 235 3.808642 8.9503087 Methanobrevibacter sp. 66852 Archaea Archaea 50.1 7.13e-5   NR MBQ6629504.1 66852 g950750 i0 43.4 0.676595744680851 53 30 67.7 0 7 165 191 243 MBQ6629504.1 hypothetical protein [Methanobrevibacter sp.] diamond 159 50.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;