RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA556842" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA556842 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26997715 26997715 PRJNA556842_P_NODE_5762_length_371_cov_7.071856_g5263_i0 PRJNA556842 5762 371 7.071856 26.23658576 root 1 Root_unresolved Root_unresolved 65.1 1.53e-10   NR WP_072906887.1 182411 g5263 i0 46.3 8.10242587601078 67 36 54.2 0 6 206 1 67 WP_072906887.1 nucleoside-diphosphate kinase [Anaerobranca californiensis] diamond 3006 65.1 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Proteinivoracaceae Anaerobranca Anaerobranca californiensis
29888849 29888849 PRJNA556842_P_NODE_17551_length_153_cov_0.896552_g17046_i0 PRJNA556842 17551 153 0.896552 1.37172456 Gracilibacteraceae bacterium 2699748 Bacteria Bacteria 44.3 0.00325   NR NLK34148.1 2699748 g17046 i0 40 0.882352941176471 45 27 88.2 0 138 4 574 618 NLK34148.1 glycosyl transferase [Gracilibacteraceae bacterium] diamond 135 44.3 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Gracilibacteraceae   Gracilibacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;