RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA554794" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8776291 8776291 PRJNA554794_P_NODE_12567_length_271_cov_1.009009_g8638_i0 PRJNA554794 12567 271 1.009009 2.73441439 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 136 3.5099999999999997e-35   NR DBA01440.1 4803 g8638 i0 71.9 16.7380073800738 89 25 98.5 0 269 3 125 213 DBA01440.1 TPA: hypothetical protein N0F65_007337 [Lagenidium giganteum] diamond 4536 137 0.992700729927007 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29509681 29509681 PRJNA554794_P_NODE_13650_length_240_cov_0.769634_g9721_i0 PRJNA554794 13650 240 0.769634 1.8471216 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 90.9 7.61e-20   NR KAF1327761.1 82926 g9721 i0 68.4 1.9 76 20 95 1 10 237 117 188 KAF1327761.1 hypothetical protein FI667_g7543, partial [Globisporangium splendens] diamond 456 90.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
32291657 32291657 PRJNA554794_P_NODE_14619_length_217_cov_1.339286_g10690_i0 PRJNA554794 14619 217 1.339286 2.90625062 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 117 4.86e-31   NR RHY88214.1 112090 g10690 i0 72.2 0.995391705069124 72 20 99.5 0 2 217 26 97 RHY88214.1 hypothetical protein DYB35_009251 [Aphanomyces astaci] diamond 216 117 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;