RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA554794" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15823677 15823677 PRJNA554794_P_NODE_19553_length_208_cov_1.339623_g15624_i0 PRJNA554794 19553 208 1.339623 2.78641584 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 3.23e-26   NR KAL0480328.1 1008807 g15624 i0 72.1 3.86538461538462 68 19 98.1 0 3 206 415 482 KAL0480328.1 elongation factor 2 [Acrasis kona] diamond 804 111 0.990990990990991 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
28751967 28751967 PRJNA554794_P_NODE_23087_length_165_cov_1.051724_g19158_i0 PRJNA554794 23087 165 1.051724 1.7353446 Acrasis kona 1008807 Heterolobosea other_Eukaryota 74.3 2.67e-15   NR KAL0487562.1 1008807 g19158 i0 59.3 0.981818181818182 54 22 98.2 0 1 162 28 81 KAL0487562.1 profilin [Acrasis kona] diamond 162 74.3 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
30394637 30394637 PRJNA554794_P_NODE_23973_length_163_cov_0.885965_g20044_i0 PRJNA554794 23973 163 0.885965 1.44412295 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 92 4.14e-20   NR XP_002680405.1 5762 g20044 i0 81.5 0.993865030674847 54 10 99.4 0 1 162 349 402 XP_002680405.1 aminoacylase [Naegleria gruberi] diamond 162 92 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30741706 30741706 PRJNA554794_P_NODE_20834_length_188_cov_1.100719_g16905_i0 PRJNA554794 20834 188 1.100719 2.06935172 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 76.6 1.23e-15   NR XP_002679621.1 5762 g16905 i0 60.3 1.00531914893617 63 23 98.9 2 1 186 66 127 XP_002679621.1 uncharacterized protein NAEGRDRAFT_65315 [Naegleria gruberi] diamond 189 76.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31373966 31373966 PRJNA554794_P_NODE_24116_length_162_cov_1.592920_g20187_i0 PRJNA554794 24116 162 1.59292 2.5805304 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 79.7 6.49e-17   NR CAG4714041.1 5763 g20187 i0 67.3 3.85185185185185 52 17 96.3 0 157 2 43 94 CAG4714041.1 unnamed protein product, partial [Naegleria fowleri] diamond 624 79.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;