RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA554794" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA554794 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3071892 3071892 PRJNA554794_P_NODE_9383_length_443_cov_1.167513_g5564_i0 PRJNA554794 9383 443 1.167513 5.17208259 Opisthokonta 33154 Chordata Chordata 199 5.8499999999999995e-61   NR XP_043939485.1 7888 g5564 i0 71.3 87.9345372460497 136 39 92.1 0 36 443 1 136 XP_043939485.1 60S ribosomal protein L5-B-like isoform X1 [Protopterus annectens] diamond 38955 200 0.995 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
7501703 7501703 PRJNA554794_P_NODE_22486_length_168_cov_0.941176_g18557_i0 PRJNA554794 22486 168 0.941176 1.58117568 Chordata 7711 Chordata Chordata 82 5.58e-19   NR XP_065766518.1 9886 g18557 i0 71.7 15.0357142857143 53 15 94.6 0 162 4 14 66 XP_065766518.1 large ribosomal subunit protein eL39-like [Muntiacus reevesi] diamond 2526 82.8 0.990338164251208 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
13877498 13877498 PRJNA554794_P_NODE_22571_length_167_cov_1.271186_g18642_i0 PRJNA554794 22571 167 1.271186 2.12288062 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.5 4.15e-11   NR CAM2107459.1 8467 g18642 i0 67.3 8.46107784431138 49 16 88 0 19 165 103 151 CAM2107459.1 unnamed protein product [Caretta caretta] diamond 1413 65.5 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
14549967 14549967 PRJNA554794_P_NODE_22772_length_166_cov_1.743590_g18843_i0 PRJNA554794 22772 166 1.74359 2.8943594 Metazoa 33208 Chordata Chordata 79.7 2.08e-17   NR XP_032984555.1 59479 g18843 i0 73.1 107.186746987952 52 14 94 0 165 10 10 61 XP_032984555.1 ubiquitin-like isoform X2 [Rhinolophus ferrumequinum] diamond 17793 80.5 0.990062111801242 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum
26744256 26744256 PRJNA554794_P_NODE_8821_length_490_cov_0.741497_g5080_i0 PRJNA554794 8821 490 0.741497 3.6333353 Metazoa 33208 Chordata Chordata 81.6 1.45e-14   NR CAB3260857.1 59560 g5080 i0 31.4 1.76326530612245 140 90 85.1 2 473 57 818 952 CAB3260857.1 uncharacterized protein LOC100176110 [Phallusia mammillata] diamond 864 81.6 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28703524 28703524 PRJNA554794_P_NODE_24807_length_161_cov_0.875000_g20878_i0 PRJNA554794 24807 161 0.875 1.40875 Metazoa 33208 Chordata Chordata 80.1 7.39e-16   NR CBY23259.1 34765 g20878 i0 69.8 6.91304347826087 53 16 98.8 0 161 3 181 233 CBY23259.1 unnamed protein product [Oikopleura dioica] diamond 1113 80.1 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
28846539 28846539 PRJNA554794_P_NODE_13188_length_252_cov_0.921182_g9259_i0 PRJNA554794 13188 252 0.921182 2.32137864 Nanorana parkeri 125878 Chordata Chordata 106 4.3899999999999995e-25   NR XP_018409906.1 125878 g9259 i0 61.9 7.57142857142857 84 32 100 0 1 252 145 228 XP_018409906.1 PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1-like [Nanorana parkeri] diamond 1908 106 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dicroglossidae Nanorana Nanorana parkeri
30489011 30489011 PRJNA554794_P_NODE_23513_length_164_cov_0.886957_g19584_i0 PRJNA554794 23513 164 0.886957 1.45460948 Ascaphus truei 8439 Chordata Chordata 96.3 2.01e-24   NR MEE6527769.1 8439 g19584 i0 81.1 7.79268292682927 53 10 97 0 163 5 16 68 MEE6527769.1 hypothetical protein [Ascaphus truei] diamond 1278 96.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
31089285 31089285 PRJNA554794_P_NODE_11355_length_319_cov_1.237037_g7428_i0 PRJNA554794 11355 319 1.237037 3.94614803 Mesocricetus auratus 10036 Chordata Chordata 58.5 1.47e-8   NR XP_040612164.1 10036 g7428 i0 53.7 2.03134796238245 54 24 50.8 1 22 183 19 71 XP_040612164.1 protein CTLA-2-beta [Mesocricetus auratus] diamond 648 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Mesocricetus Mesocricetus auratus
31595467 31595467 PRJNA554794_P_NODE_23096_length_165_cov_0.974138_g19167_i0 PRJNA554794 23096 165 0.974138 1.6073277 Phalacrocorax carbo 9209 Chordata Chordata 56.2 2.29e-7   NR XP_064326862.1 9209 g19167 i0 58.7 7.36363636363636 46 19 83.6 0 7 144 9 54 XP_064326862.1 sialate O-acetylesterase isoform X4 [Phalacrocorax carbo] diamond 1215 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Suliformes Phalacrocoracidae Phalacrocorax Phalacrocorax carbo
31704705 31704705 PRJNA554794_P_NODE_24437_length_162_cov_0.778761_g20508_i0 PRJNA554794 24437 162 0.778761 1.26159282 Chordata 7711 Chordata Chordata 84 8.46e-19   NR XP_039261758.1 7725 g20508 i0 74 3.75925925925926 50 13 92.6 0 162 13 27 76 XP_039261758.1 transcription factor BTF3 homolog 4-like [Styela clava] diamond 609 84.7 0.991735537190083 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;