RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA554794" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29366565 29366565 PRJNA554794_P_NODE_20649_length_191_cov_0.598592_g16720_i0 PRJNA554794 20649 191 0.598592 1.14331072 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 1.96e-28   NR XP_067197041.1 515981 g16720 i0 81 12.5183246073298 63 12 99 0 190 2 11 73 XP_067197041.1 uncharacterized protein FG386_000852 [Cryptosporidium ryanae] diamond 2391 115 0.991304347826087 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ryanae
30472096 30472096 PRJNA554794_P_NODE_20253_length_197_cov_1.364865_g16324_i0 PRJNA554794 20253 197 1.364865 2.68878405 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 90.9 3.0600000000000003e-21   NR XP_013229451.1 5802 g16324 i0 61.5 26.4670050761421 65 25 99 0 196 2 23 87 XP_013229451.1 translation initiation factor eIF-5A, putative [Eimeria tenella] diamond 5214 91.7 0.991275899672846 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;