RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA551951" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA551951 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28152281 28152281 PRJNA551951_S_NODE_3205_length_520_cov_10.973196_g3095_i0 PRJNA551951 3205 520 10.973196 57.0606192 Anaerolineae bacterium 2052143 Bacteria Bacteria 170 6.189999999999999e-48   NR MCW1970986.1 2052143 g3095 i0 95.9 0.565384615384615 98 3 56 1 293 3 68 165 MCW1970986.1 ABC transporter substrate-binding protein [Anaerolineae bacterium] diamond 294 170 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
30678368 30678368 PRJNA551951_S_NODE_15093_length_169_cov_2.470149_g14975_i0 PRJNA551951 15093 169 2.470149 4.17455181 Anaerolineales bacterium 2073117 Bacteria Bacteria 104 1.3e-26   NR HND50335.1 2073117 g14975 i0 100 0.869822485207101 49 0 87 0 169 23 112 160 HND50335.1 NUDIX hydrolase [Anaerolineales bacterium] diamond 147 104 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31373955 31373955 PRJNA551951_S_NODE_6136_length_344_cov_4.857605_g6018_i0 PRJNA551951 6136 344 4.857605 16.7101612 Anaerolineales bacterium 2073117 Bacteria Bacteria 227 5.04e-74   NR HND50335.1 2073117 g6018 i0 100 0.968023255813954 111 0 96.8 0 335 3 9 119 HND50335.1 NUDIX hydrolase [Anaerolineales bacterium] diamond 333 227 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32417879 32417879 PRJNA551951_S_NODE_1919_length_688_cov_5.574273_g1836_i0 PRJNA551951 1919 688 5.574273 38.35099824 Chloroflexota bacterium 2026724 Bacteria Bacteria 206 1.77e-63   NR NCF68551.1 2026724 g1836 i0 58.3 4.71802325581395 180 75 78.5 0 615 76 1 180 NCF68551.1 recombinase family protein [Chloroflexota bacterium] diamond 3246 206 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;