RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA551951" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA551951 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3071596 3071596 PRJNA551951_S_NODE_7523_length_295_cov_5.203846_g7405_i0 PRJNA551951 7523 295 5.203846 15.3513457 Fragilariopsis cylindrus CCMP11 186039 SAR_Eukaryotes SAR_Eukaryotes 162 6.54e-49   NR OEU22064.1 635003 g7405 i0 87.5 1.95254237288136 96 11 96.6 1 10 294 1 96 OEU22064.1 ribosomal protein S15e [Fragilariopsis cylindrus CCMP1102] diamond 576 162 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus
19646808 19646808 PRJNA551951_S_NODE_11036_length_218_cov_1.409836_g10918_i0 PRJNA551951 11036 218 1.409836 3.07344248 Tribonema minus 303371 SAR_Eukaryotes SAR_Eukaryotes 95.9 9.55e-23   NR KAG5179693.1 303371 g10918 i0 73 1.77522935779817 63 17 86.7 0 29 217 106 168 KAG5179693.1 chloroplast 29 kDa ribonucleoprotein [Tribonema minus] diamond 387 95.9 1 Eukaryota Sar     Xanthophyceae Tribonematales Tribonemataceae Tribonema Tribonema minus
30851059 30851059 PRJNA551951_S_NODE_14734_length_172_cov_3.722628_g14616_i0 PRJNA551951 14734 172 3.722628 6.40292016 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 117 1.83e-32   NR GFH46906.1 426638 g14616 i0 98.1 1.88372093023256 54 1 94.2 0 172 11 58 111 GFH46906.1 hypothetical protein CTEN210_03380 [Chaetoceros tenuissimus] diamond 324 117 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;