RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA551951" and tax_clade = "FCB group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 9 ✖

bioproject 1

  • PRJNA551951 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5624396 5624396 PRJNA551951_S_NODE_17205_length_154_cov_1.605042_g17087_i0 PRJNA551951 17205 154 1.605042 2.47176468 Hymenobacter actinosclerus 82805 Bacteria Bacteria 103 3.24e-25   NR WP_177189699.1 82805 g17087 i0 94.1 0.993506493506494 51 3 99.4 0 2 154 44 94 WP_177189699.1 phosphatase PAP2 family protein [Hymenobacter actinosclerus] diamond 153 103 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter actinosclerus
6898473 6898473 PRJNA551951_S_NODE_16126_length_161_cov_1.587302_g16008_i0 PRJNA551951 16126 161 1.587302 2.55555622 Hydrotalea sp. 2881279 Bacteria Bacteria 107 8.310000000000001e-26   NR WP_288097092.1 2881279 g16008 i0 100 2.96273291925466 53 0 98.8 0 160 2 34 86 WP_288097092.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB [Hydrotalea sp.] diamond 477 107 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Hydrotalea Hydrotalea sp.
29650207 29650207 PRJNA551951_S_NODE_15070_length_169_cov_3.373134_g14952_i0 PRJNA551951 15070 169 3.373134 5.70059646 FCB group 1783270 Bacteria Bacteria 50.8 6.88e-6   NR WP_141850568.1 96345 g14952 i0 54.1 3.10650887573965 37 17 65.7 0 43 153 72 108 WP_141850568.1 hypothetical protein [Flavobacterium psychrophilum] diamond 525 50.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum
30426229 30426229 PRJNA551951_S_NODE_5893_length_355_cov_2.093750_g5775_i0 PRJNA551951 5893 355 2.09375 7.4328125 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 162 7.91e-46   NR MCA6440853.1 1869212 g5775 i0 98.8 0.684507042253521 81 1 68.5 0 3 245 27 107 MCA6440853.1 aspartate aminotransferase family protein [Chitinophagaceae bacterium] diamond 243 162 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
30678369 30678369 PRJNA551951_S_NODE_9233_length_253_cov_1.848624_g9115_i0 PRJNA551951 9233 253 1.848624 4.67701872 Flavobacterium humi 2562683 Bacteria Bacteria 178 8.479999999999999e-53   NR WP_135524882.1 2562683 g9115 i0 94 7.96837944664032 84 5 99.6 0 253 2 271 354 WP_135524882.1 cupin domain-containing protein [Flavobacterium humi] diamond 2016 178 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium humi
31247268 31247268 PRJNA551951_S_NODE_8015_length_282_cov_1.246964_g7897_i0 PRJNA551951 8015 282 1.246964 3.51643848 Phocaeicola plebeius 310297 Bacteria Bacteria 220 2.9599999999999994e-67   NR WP_022052406.1 310297 g7897 i0 100 1 94 0 100 0 282 1 64 157 WP_022052406.1 alpha-L-fucosidase [Phocaeicola plebeius] diamond 282 220 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius
32417882 32417882 PRJNA551951_S_NODE_6079_length_346_cov_2.990354_g5961_i0 PRJNA551951 6079 346 2.990354 10.34662484 Chryseobacterium 59732 Bacteria Bacteria 219 9.18e-71   NR WP_246958600.1 59732 g5961 i0 99.1 0.953757225433526 110 1 95.4 0 3 332 38 147 WP_246958600.1 MULTISPECIES: TetR/AcrR family transcriptional regulator [Chryseobacterium] diamond 330 219 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium  
32638611 32638611 PRJNA551951_S_NODE_5040_length_393_cov_17.698324_g4923_i0 PRJNA551951 5040 393 17.698324 69.55441332 Hanamia sp. 2930256 Bacteria Bacteria 45.8 0.0147   NR HXS54988.1 2930256 g4923 i0 55.8 0.32824427480916 43 19 32.8 0 155 27 1 43 HXS54988.1 alpha-L-fucosidase [Hanamia sp.] diamond 129 45.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Hanamia Hanamia sp.
32764784 32764784 PRJNA551951_S_NODE_15640_length_165_cov_1.230769_g15522_i0 PRJNA551951 15640 165 1.230769 2.03076885 Porphyromonas sp. oral taxon 278 712437 Bacteria Bacteria 113 1.4900000000000002e-27   NR WP_021666217.1 712437 g15522 i0 100 1 55 0 100 0 1 165 569 623 WP_021666217.1 RecQ family ATP-dependent DNA helicase [Porphyromonas sp. oral taxon 278] diamond 165 113 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 278

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;