RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA550047" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA550047 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27836080 27836080 PRJNA550047_P_NODE_431664_length_253_cov_7.116667_g429692_i0 PRJNA550047 431664 253 7.116667 18.00516751 Fervidobacterium sp. 1871331 Bacteria Bacteria 147 5.36e-41   NR HQE49750.1 1871331 g429692 i0 96.4 0.99604743083004 84 3 99.6 0 1 252 126 209 HQE49750.1 hypothetical protein [Fervidobacterium sp.] diamond 252 147 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
28372963 28372963 PRJNA550047_P_NODE_572746_length_206_cov_11.037594_g570773_i0 PRJNA550047 572746 206 11.037594 22.73744364 Fervidobacterium sp. 231 1871331 Bacteria Bacteria 132 4.5799999999999995e-37   NR WP_164542101.1 1755815 g570773 i0 94.1 0.990291262135922 68 4 99 0 206 3 133 200 WP_164542101.1 lactate utilization protein [Fervidobacterium sp. 2310opik-2] diamond 204 132 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp. 2310opik-2
31009071 31009071 PRJNA550047_P_NODE_521554_length_223_cov_9.353333_g519581_i0 PRJNA550047 521554 223 9.353333 20.85793259 Bacteria 2 Bacteria Bacteria 55.1 1.3e-6   NR RKX54834.1 28240 g519581 i0 40.8 11.3677130044843 71 42 95.5 0 1 213 280 350 RKX54834.1 MAG: DNA gyrase subunit A, partial [Thermotoga sp.] diamond 2535 55.5 0.992792792792793 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;