RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA550047" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28341474 28341474 PRJNA550047_P_NODE_594386_length_199_cov_20.444444_g592413_i0 PRJNA550047 594386 199 20.444444 40.68444356 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67.4 4.25e-11   NR XP_004338784.1 1257118 g592413 i0 46.2 0.979899497487437 65 35 98 0 5 199 670 734 XP_004338784.1 uncharacterized protein ACA1_382400 [Acanthamoeba castellanii str. Neff] diamond 195 67.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29667004 29667004 PRJNA550047_P_NODE_121790_length_345_cov_6.636029_g119830_i0 PRJNA550047 121790 345 6.636029 22.89430005 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.4 2.08e-4   NR XP_004349650.1 1257118 g119830 i0 55.8 0.373913043478261 43 18 37.4 1 132 4 208 249 XP_004349650.1 RhoGAP domain containing protein [Acanthamoeba castellanii str. Neff] diamond 129 50.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29857028 29857028 PRJNA550047_P_NODE_70831_length_345_cov_12.216912_g68871_i0 PRJNA550047 70831 345 12.216912 42.1483464 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 1.51e-15   NR XP_004352827.1 1257118 g68871 i0 42.4 1.14782608695652 132 58 99.1 2 3 344 427 558 XP_004352827.1 efflux ABC transporter, permease domain containing protein [Acanthamoeba castellanii str. Neff] diamond 396 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32890575 32890575 PRJNA550047_P_NODE_50440_length_345_cov_21.944853_g48480_i0 PRJNA550047 50440 345 21.944853 75.70974285 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 0.00366   NR XP_004339511.1 1257118 g48480 i0 66.7 0.234782608695652 27 9 23.5 0 299 219 10 36 XP_004339511.1 vacuolar fusion protein ccz1 family protein [Acanthamoeba castellanii str. Neff] diamond 81 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;