RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA550047" and tax_phylum = "Candidatus Deferrimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Deferrimicrobiota · 3 ✖

bioproject 1

  • PRJNA550047 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29004904 29004904 PRJNA550047_P_NODE_487088_length_234_cov_26.229814_g485115_i0 PRJNA550047 487088 234 26.229814 61.37776476 Candidatus Deferrimicrobium sp. 3060586 Bacteria Bacteria 64.7 5.27e-10   NR WP_330893452.1 3060586 g485115 i0 50 2.79487179487179 64 32 82.1 0 232 41 30 93 WP_330893452.1 hypothetical protein [Candidatus Deferrimicrobium sp.] diamond 654 64.7 1 Bacteria     Candidatus Deferrimicrobiota Candidatus Deferrimicrobia Candidatus Deferrimicrobiales Candidatus Deferrimicrobiaceae Candidatus Deferrimicrobium Candidatus Deferrimicrobium sp.
30394494 30394494 PRJNA550047_P_NODE_385793_length_270_cov_13.532995_g383821_i0 PRJNA550047 385793 270 13.532995 36.5390865 Candidatus Deferrimicrobium sp. 3060586 Bacteria Bacteria 115 8.75e-30   NR HEX7519651.1 3060586 g383821 i0 61.8 0.988888888888889 89 34 98.9 0 270 4 2 90 HEX7519651.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [Candidatus Deferrimicrobium sp.] diamond 267 115 1 Bacteria     Candidatus Deferrimicrobiota Candidatus Deferrimicrobia Candidatus Deferrimicrobiales Candidatus Deferrimicrobiaceae Candidatus Deferrimicrobium Candidatus Deferrimicrobium sp.
31342155 31342155 PRJNA550047_P_NODE_602196_length_197_cov_11.870968_g600223_i0 PRJNA550047 602196 197 11.870968 23.38580696 Candidatus Deferrimicrobium sp. 3060586 Bacteria Bacteria 42.4 0.0276   NR HWR83997.1 3060586 g600223 i0 45.2 0.639593908629442 42 22 62.4 1 58 180 64 105 HWR83997.1 glycosyltransferase N-terminal domain-containing protein [Candidatus Deferrimicrobium sp.] diamond 126 42.4 1 Bacteria     Candidatus Deferrimicrobiota Candidatus Deferrimicrobia Candidatus Deferrimicrobiales Candidatus Deferrimicrobiaceae Candidatus Deferrimicrobium Candidatus Deferrimicrobium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;