RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA550047" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28152026 28152026 PRJNA550047_P_NODE_186005_length_344_cov_17.324723_g184044_i0 PRJNA550047 186005 344 17.324723 59.59704712 Babesia ovis 5869 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0454   NR GFE55099.1 5869 g184044 i0 58.3 0.313953488372093 36 12 31.4 1 305 198 470 502 GFE55099.1 AMP-binding enzyme domain-containing protein [Babesia ovis] diamond 108 43.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovis
29667144 29667144 PRJNA550047_P_NODE_446090_length_248_cov_10.011429_g444118_i0 PRJNA550047 446090 248 10.011429 24.82834392 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0161   NR XP_028528885.1 5849 g444118 i0 43.1 0.616935483870968 51 26 60.5 2 202 53 119 167 XP_028528885.1 Plasmodium exported protein, unknown function [Plasmodium gallinaceum] diamond 153 43.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
30899635 30899635 PRJNA550047_P_NODE_273834_length_299_cov_8.570796_g271865_i0 PRJNA550047 273834 299 8.570796 25.62668004 Babesia duncani 323732 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00594   NR XP_067802635.1 323732 g271865 i0 66.7 0.331103678929766 33 11 33.1 0 2 100 674 706 XP_067802635.1 bifunctional HSP90 [Babesia duncani] diamond 99 45.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia duncani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;