RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA550047" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJNA550047 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28341272 28341272 PRJNA550047_P_NODE_175126_length_345_cov_2.988971_g173166_i0 PRJNA550047 175126 345 2.988971 10.31194995 Methanobrevibacter woesei 190976 Archaea Archaea 44.3 0.0345   NR WP_407373701.1 190976 g173166 i0 90 0.173913043478261 20 2 17.4 0 345 286 480 499 WP_407373701.1 phage tail protein [Methanobrevibacter woesei] diamond 60 44.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter woesei
28499290 28499290 PRJNA550047_P_NODE_159047_length_345_cov_4.132353_g157087_i0 PRJNA550047 159047 345 4.132353 14.25661785 Methanobacterium sp. 2164 Archaea Archaea 94 6.960000000000001e-21   NR HEY0196536.1 2164 g157087 i0 95.9 0.426086956521739 49 2 42.6 0 149 3 94 142 HEY0196536.1 TatD family hydrolase [Methanobacterium sp.] diamond 147 94 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
28594012 28594012 PRJNA550047_P_NODE_289147_length_298_cov_8.173333_g287178_i0 PRJNA550047 289147 298 8.173333 24.35653234 Methanobrevibacter sp. 66852 Archaea Archaea 95.5 3.88e-21   NR MBO5966653.1 66852 g287178 i0 96 1.00671140939597 50 2 50.3 0 296 147 75 124 MBO5966653.1 right-handed parallel beta-helix repeat-containing protein [Methanobrevibacter sp.] diamond 300 95.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28594123 28594123 PRJNA550047_P_NODE_531527_length_220_cov_4.190476_g529554_i0 PRJNA550047 531527 220 4.190476 9.2190472 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 128 1.7299999999999998e-35   NR WP_296878004.1 253161 g529554 i0 91.7 0.981818181818182 72 6 98.2 0 218 3 58 129 WP_296878004.1 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT [uncultured Methanobrevibacter sp.] diamond 216 128 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
29888728 29888728 PRJNA550047_P_NODE_442371_length_249_cov_14.670455_g440399_i0 PRJNA550047 442371 249 14.670455 36.52943295 Methanobacteriaceae archaeon 2099680 Archaea Archaea 148 3.8399999999999985e-43   NR NYB27440.1 2099680 g440399 i0 97.6 0.987951807228916 82 2 98.8 0 247 2 107 188 NYB27440.1 hypothetical protein [Methanobacteriaceae archaeon] diamond 246 148 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
32764634 32764634 PRJNA550047_P_NODE_344300_length_287_cov_10.037383_g342330_i0 PRJNA550047 344300 287 10.037383 28.80728921 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 149 8.44e-42   NR WP_296784426.1 253161 g342330 i0 95.1 0.857142857142857 82 4 85.7 0 248 3 55 136 WP_296784426.1 GTP cyclohydrolase MptA [uncultured Methanobrevibacter sp.] diamond 246 149 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;