RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA549880" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA549880 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27457334 27457334 PRJNA549880_P_NODE_14403_length_243_cov_0.905882_g14310_i0 PRJNA549880 14403 243 0.905882 2.20129326 Tinamus guttatus 94827 Chordata Chordata 97.4 1.9600000000000003e-21   NR XP_010212325.1 94827 g14310 i0 64.6 0.802469135802469 65 23 80.2 0 196 2 383 447 XP_010212325.1 PREDICTED: uncharacterized protein LOC104567219, partial [Tinamus guttatus] diamond 195 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
28246299 28246299 PRJNA549880_P_NODE_11466_length_249_cov_0.875000_g11373_i0 PRJNA549880 11466 249 0.875 2.17875 Charadrius vociferus 50402 Chordata Chordata 53.1 8.97e-6   NR XP_009883999.1 50402 g11373 i0 55.8 0.626506024096386 52 20 59 1 147 1 597 648 XP_009883999.1 PREDICTED: uncharacterized protein LOC104287046, partial [Charadrius vociferus] diamond 156 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
29856763 29856763 PRJNA549880_P_NODE_6051_length_320_cov_1.064777_g5958_i0 PRJNA549880 6051 320 1.064777 3.4072864 Odobenus rosmarus divergens 9708 Chordata Chordata 74.3 3.87e-14   NR XP_012420376.1 9708 g5958 i0 62.7 0.478125 51 19 47.8 0 96 248 104 154 XP_012420376.1 PREDICTED: hemoglobin subunit beta isoform X1 [Odobenus rosmarus divergens] diamond 153 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Odobenidae Odobenus Odobenus rosmarus
31753003 31753003 PRJNA549880_P_NODE_13697_length_245_cov_0.895349_g13604_i0 PRJNA549880 13697 245 0.895349 2.19360505 Dryobates pubescens 118200 Chordata Chordata 45.4 0.00402   NR KFV62420.1 118200 g13604 i0 57.1 0.514285714285714 42 18 51.4 0 120 245 279 320 KFV62420.1 hypothetical protein N307_01705, partial [Dryobates pubescens] diamond 126 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Piciformes Picidae Dryobates Dryobates pubescens
32369287 32369287 PRJNA549880_P_NODE_3599_length_391_cov_3.056604_g3506_i0 PRJNA549880 3599 391 3.056604 11.95132164 Metazoa 33208 Chordata Chordata 155 5.1699999999999994e-46   NR XP_039257479.1 7725 g3506 i0 66.7 6.30690537084399 114 37 87.5 1 50 391 9 121 XP_039257479.1 60S ribosomal protein L22-like isoform X2 [Styela clava] diamond 2466 155 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
32590594 32590594 PRJNA549880_P_NODE_7499_length_291_cov_1.766055_g7406_i0 PRJNA549880 7499 291 1.766055 5.13922005 Vespertilionidae 9431 Chordata Chordata 42.7 0.0365   NR KAF6369007.1 51298 g7406 i0 78.3 1.28865979381443 23 5 23.7 0 3 71 141 163 KAF6369007.1 hypothetical protein mMyoMyo1_010414 [Myotis myotis] diamond 375 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;