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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA549880" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 17 ✖

tax_kingdom 1

bioproject 1

  • PRJNA549880 · 17 ✖

analysis 1

  • diamond · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3062912 3062912 PRJNA549880_P_NODE_7783_length_287_cov_2.056075_g7690_i0 PRJNA549880 7783 287 2.056075 5.90093525 Thermoleophilia bacterium 2026888 Bacteria Bacteria 166 2.7199999999999993e-46   NR MCW2921874.1 2026888 g7690 i0 86.3 0.993031358885017 95 13 99.3 0 3 287 391 485 MCW2921874.1 glycosyl transferase group 1 [Thermoleophilia bacterium] diamond 285 166 1 Bacteria   Bacillati Actinomycetota Thermoleophilia       Thermoleophilia bacterium
11322773 11322773 PRJNA549880_P_NODE_9969_length_256_cov_1.672131_g9876_i0 PRJNA549880 9969 256 1.672131 4.28065536 Pseudonocardia sp. C8 2762759 Bacteria Bacteria 143 3.69e-41   NR WP_186357458.1 2762759 g9876 i0 83.3 1.96875 84 14 98.4 0 3 254 1 84 WP_186357458.1 DUF6879 family protein [Pseudonocardia sp. C8] diamond 504 143 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. C8
17089351 17089351 PRJNA549880_P_NODE_15154_length_242_cov_0.911243_g15061_i0 PRJNA549880 15154 242 0.911243 2.20520806 Microbacterium sp. Leaf2 51671 Bacteria Bacteria 130 1.18e-33   NR WP_056226784.1 1735677 g15061 i0 87.5 1.98347107438017 80 10 99.2 0 2 241 113 192 WP_056226784.1 LCP family protein [Microbacterium sp. Leaf203] diamond 480 130 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Leaf203
17089353 17089353 PRJNA549880_P_NODE_15194_length_242_cov_0.911243_g15101_i0 PRJNA549880 15194 242 0.911243 2.20520806 Actinomycetota bacterium 2900548 Bacteria Bacteria 154 3.569999999999999e-42   NR MSZ63347.1 2900548 g15101 i0 100 0.991735537190083 80 0 99.2 0 240 1 277 356 MSZ63347.1 DNA polymerase III subunit gamma and tau [Actinomycetota bacterium] diamond 240 154 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
26919786 26919786 PRJNA549880_P_NODE_14482_length_243_cov_0.905882_g14389_i0 PRJNA549880 14482 243 0.905882 2.20129326 Nocardia jinanensis 382504 Bacteria Bacteria 105 3.71e-25   NR WP_058855660.1 382504 g14389 i0 71.3 0.987654320987654 80 23 98.8 0 241 2 102 181 WP_058855660.1 prenyltransferase/squalene oxidase repeat-containing protein [Nocardia jinanensis] diamond 240 105 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia jinanensis
27204145 27204145 PRJNA549880_P_NODE_10902_length_250_cov_0.870056_g10809_i0 PRJNA549880 10902 250 0.870056 2.17514 Aurantimicrobium sp. 1930784 Bacteria Bacteria 50.4 7.6e-5   NR WP_332627284.1 1930784 g10809 i0 40.3 0.744 62 35 72 1 51 230 216 277 WP_332627284.1 hypothetical protein [Aurantimicrobium sp.] diamond 186 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aurantimicrobium Aurantimicrobium sp.
27583348 27583348 PRJNA549880_P_NODE_9164_length_268_cov_1.410256_g9071_i0 PRJNA549880 9164 268 1.410256 3.77948608 Leifsonia sp. Root4 1736525 Bacteria Bacteria 73.2 5.03e-14   NR WP_157509566.1 1736525 g9071 i0 67.3 0.615671641791045 55 18 61.6 0 104 268 1 55 WP_157509566.1 DUF3995 domain-containing protein [Leifsonia sp. Root4] diamond 165 73.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Root4
28088511 28088511 PRJNA549880_P_NODE_11005_length_250_cov_0.870056_g10912_i0 PRJNA549880 11005 250 0.870056 2.17514 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 52.8 1.23e-5   NR HET6965850.1 2201156 g10912 i0 46.8 1.572 62 33 74.4 0 244 59 443 504 HET6965850.1 glycosyltransferase [Acidimicrobiales bacterium] diamond 393 52.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28151967 28151967 PRJNA549880_P_NODE_15565_length_241_cov_0.916667_g15472_i0 PRJNA549880 15565 241 0.916667 2.20916747 Corynebacterium dentalis 2014528 Bacteria Bacteria 89.4 1.3e-18   NR WP_312099008.1 2014528 g15472 i0 97.7 1.12033195020747 44 1 54.8 0 1 132 451 494 WP_312099008.1 phage portal protein family protein [Corynebacterium dentalis] diamond 270 89.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium dentalis
28292776 28292776 PRJNA549880_P_NODE_14806_length_243_cov_0.888235_g14713_i0 PRJNA549880 14806 243 0.888235 2.15841105 Rubrobacter 42255 Bacteria Bacteria 143 1.38e-37   NR WP_011564819.1 49319 g14713 i0 82.5 3.95061728395062 80 14 98.8 0 2 241 384 463 WP_011564819.1 hydantoinase/oxoprolinase family protein [Rubrobacter xylanophilus] diamond 960 143 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus
28720199 28720199 PRJNA549880_P_NODE_12227_length_248_cov_0.880000_g12134_i0 PRJNA549880 12227 248 0.88 2.1824 Saccharopolyspora dendranthemae 1181886 Bacteria Bacteria 167 2.9799999999999998e-46   NR WP_145738170.1 1181886 g12134 i0 97.6 0.991935483870968 82 2 99.2 0 3 248 229 310 WP_145738170.1 GtrA family protein [Saccharopolyspora dendranthemae] diamond 246 167 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora dendranthemae
28751659 28751659 PRJNA549880_P_NODE_10447_length_251_cov_0.865169_g10354_i0 PRJNA549880 10447 251 0.865169 2.17157419 Arthrobacter tumbae 163874 Bacteria Bacteria 154 2.21e-41   NR WP_204530929.1 163874 g10354 i0 95.2 4.9601593625498 83 4 99.2 0 251 3 626 708 WP_204530929.1 ATP-dependent DNA helicase RecG [Arthrobacter tumbae] diamond 1245 154 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter tumbae
29524349 29524349 PRJNA549880_P_NODE_13710_length_245_cov_0.895349_g13617_i0 PRJNA549880 13710 245 0.895349 2.19360505 Janibacter 53457 Bacteria Bacteria 122 1.8399999999999998e-31   NR WP_165399562.1 53458 g13617 i0 74.1 4.95918367346939 81 21 99.2 0 3 245 37 117 WP_165399562.1 AMP-binding protein [Janibacter limosus] diamond 1215 123 0.991869918699187 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter limosus
30029708 30029708 PRJNA549880_P_NODE_9151_length_268_cov_1.579487_g9058_i0 PRJNA549880 9151 268 1.579487 4.23302516 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 81.6 5.5e-18   NR MCW2971728.1 2026888 g9058 i0 58.4 4.52238805970149 77 30 86.2 1 22 252 14 88 MCW2971728.1 adenine phosphoribosyltransferase [Thermoleophilia bacterium] diamond 1212 82.4 0.990291262135922 Bacteria   Bacillati Actinomycetota Thermoleophilia       Thermoleophilia bacterium
30488688 30488688 PRJNA549880_P_NODE_12253_length_248_cov_0.880000_g12160_i0 PRJNA549880 12253 248 0.88 2.1824 Lawsonella sp. 2041415 Bacteria Bacteria 173 3.959999999999999e-48   NR WP_290595345.1 2041415 g12160 i0 100 0.991935483870968 82 0 99.2 0 248 3 742 823 WP_290595345.1 DEAD/DEAH box helicase [Lawsonella sp.] diamond 246 173 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella sp.
30741392 30741392 PRJNA549880_P_NODE_11794_length_249_cov_0.875000_g11701_i0 PRJNA549880 11794 249 0.875 2.17875 Pseudoclavibacter sp. 1915061 Bacteria Bacteria 142 1.75e-41   NR HHW51297.1 1915061 g11701 i0 98.6 0.831325301204819 69 1 83.1 0 207 1 1 69 HHW51297.1 hydroxyacid dehydrogenase [Pseudoclavibacter sp.] diamond 207 142 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp.
32385873 32385873 PRJNA549880_P_NODE_15099_length_242_cov_0.911243_g15006_i0 PRJNA549880 15099 242 0.911243 2.20520806 unclassified Micrococcus 2620948 Bacteria Bacteria 123 3.86e-33   NR WP_248115086.1 2620948 g15006 i0 98.4 0.756198347107438 61 1 75.6 0 11 193 1 61 WP_248115086.1 MULTISPECIES: acyltransferase [unclassified Micrococcus] diamond 183 123 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;