RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA547066" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA547066 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28025557 28025557 PRJNA547066_P_NODE_3645_length_222_cov_1.497326_g3551_i0 PRJNA547066 3645 222 1.497326 3.32406372 Bacteroidia bacterium 2044936 Bacteria Bacteria 44.7 0.00415   NR HXU26773.1 2044936 g3551 i0 83.3 0.324324324324324 24 4 32.4 0 217 146 171 194 HXU26773.1 NADH-quinone oxidoreductase subunit C [Bacteroidia bacterium] diamond 72 44.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia       Bacteroidia bacterium
31531824 31531824 PRJNA547066_P_NODE_4576_length_184_cov_1.073826_g4482_i0 PRJNA547066 4576 184 1.073826 1.97583984 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 89 1.96e-19   NR MBL0233291.1 1869212 g4482 i0 73.3 0.978260869565217 60 16 97.8 0 182 3 194 253 MBL0233291.1 hypothetical protein [Chitinophagaceae bacterium] diamond 180 89 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;