RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA547066" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA547066 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30520234 30520234 PRJNA547066_P_NODE_6193_length_150_cov_1.043478_g6099_i0 PRJNA547066 6193 150 1.043478 1.565217 Patescibacteria group bacterium 2052139 Bacteria Bacteria 59.3 1.45e-8   NR BCX15089.1 2052139 g6099 i0 63 0.92 46 17 92 0 142 5 50 95 BCX15089.1 MAG: hypothetical protein KatS3mg088_772 [Patescibacteria group bacterium] diamond 138 59.3 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32890354 32890354 PRJNA547066_P_NODE_6060_length_152_cov_1.025641_g5966_i0 PRJNA547066 6060 152 1.025641 1.55897432 Minisyncoccota bacterium 2053589 Bacteria Bacteria 86.7 3.21e-18   NR HEY6019127.1 2053589 g5966 i0 72 0.986842105263158 50 14 98.7 0 150 1 200 249 HEY6019127.1 terminase family protein [Candidatus Paceibacterota bacterium] diamond 150 86.7 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;