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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA546018" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 17 ✖

tax_kingdom 1

bioproject 1

  • PRJNA546018 · 17 ✖

analysis 1

  • diamond · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4337579 4337579 PRJNA546018_S_NODE_10724_length_525_cov_3.437500_g10401_i0 PRJNA546018 10724 525 3.4375 18.046875 root 1 Root_unresolved Root_unresolved 189 6.25e-58   NR WP_002619414.1 41 g10401 i0 71.1 11.1428571428571 128 36 73.1 1 506 123 45 171 WP_002619414.1 peptidylprolyl isomerase [Stigmatella aurantiaca] diamond 5850 190 0.994736842105263 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
6888470 6888470 PRJNA546018_S_NODE_23446_length_330_cov_8.197026_g23121_i0 PRJNA546018 23446 330 8.197026 27.0501858 Myxococcota bacterium 2818507 Bacteria Bacteria 55.8 2.39e-6   NR MEE8474660.1 2818507 g23121 i0 44 1.31818181818182 75 31 65.5 3 305 90 347 413 MEE8474660.1 sulfotransferase [Myxococcota bacterium] diamond 435 55.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
8163661 8163661 PRJNA546018_S_NODE_25487_length_315_cov_2.877953_g25162_i0 PRJNA546018 25487 315 2.877953 9.06555195 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 148 1.45e-39   NR MBM4370444.1 2026735 g25162 i0 75 1.75238095238095 92 23 87.6 0 17 292 221 312 MBM4370444.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 552 148 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
8164143 8164143 PRJNA546018_S_NODE_53807_length_207_cov_2.479452_g53482_i0 PRJNA546018 53807 207 2.479452 5.13246564 Pseudomonadati 3379134 Bacteria Bacteria 99.4 1.2e-23   NR MCE9574917.1 2026735 g53482 i0 82 6.18840579710145 61 11 88.4 0 24 206 122 182 MCE9574917.1 SDR family oxidoreductase [Deltaproteobacteria bacterium] diamond 1281 99.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
11989702 11989702 PRJNA546018_S_NODE_28970_length_292_cov_8.766234_g28645_i0 PRJNA546018 28970 292 8.766234 25.59740328 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 176 1.4e-49   NR MBA3451750.1 2026735 g28645 i0 97.7 0.893835616438356 87 2 89.4 0 284 24 196 282 MBA3451750.1 GAF domain-containing protein [Deltaproteobacteria bacterium] diamond 261 176 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
23463711 23463711 PRJNA546018_S_NODE_6939_length_679_cov_1.852751_g6651_i0 PRJNA546018 6939 679 1.852751 12.58017929 Myxococcales bacterium 2026763 Bacteria Bacteria 328 1.32e-109   NR MBL8682022.1 2026763 g6651 i0 72.7 3.87481590574374 220 59 96.8 1 678 22 112 331 MBL8682022.1 pyruvate dehydrogenase complex E1 component subunit beta [Myxococcales bacterium] diamond 2631 328 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27962311 27962311 PRJNA546018_S_NODE_26845_length_306_cov_2.665306_g26520_i0 PRJNA546018 26845 306 2.665306 8.15583636 Polyangiales bacterium 3034171 Bacteria Bacteria 131 1.81e-33   NR MFO0562219.1 3034171 g26520 i0 74.7 0.852941176470588 87 21 85.3 1 283 23 282 367 MFO0562219.1 hypothetical protein [Polyangiales bacterium] diamond 261 131 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
28229487 28229487 PRJNA546018_S_NODE_11926_length_493_cov_2.159722_g11602_i0 PRJNA546018 11926 493 2.159722 10.64742946 Pseudomonadati 3379134 Bacteria Bacteria 47.4 0.0116   NR HEY4179607.1 2212474 g11602 i0 42.6 0.967545638945233 54 31 32.9 0 486 325 1175 1228 HEY4179607.1 alpha-2-macroglobulin family protein [Kofleriaceae bacterium] diamond 477 47.8 0.99163179916318 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28545734 28545734 PRJNA546018_S_NODE_11807_length_495_cov_14.880184_g11483_i0 PRJNA546018 11807 495 14.880184 73.6569108 Pseudomonadati 3379134 Bacteria Bacteria 62 9.39e-8   NR WP_224193614.1 889268 g11483 i0 32.8 2.53939393939394 119 74 69.1 3 47 388 133 250 WP_224193614.1 WD40 repeat domain-containing protein [Nannocystis pusilla] diamond 1257 62 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis pusilla
28814526 28814526 PRJNA546018_S_NODE_50188_length_214_cov_1.274510_g49863_i0 PRJNA546018 50188 214 1.27451 2.7274514 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 77.4 7.48e-16   NR MBS2015896.1 2026735 g49863 i0 74.5 0.714953271028037 51 13 71.5 0 153 1 1 51 MBS2015896.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 153 77.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29162361 29162361 PRJNA546018_S_NODE_15789_length_416_cov_2.738028_g15464_i0 PRJNA546018 15789 416 2.738028 11.39019648 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 120 3.93e-30   NR MBN8541789.1 2026735 g15464 i0 46.2 0.9375 130 70 93.8 0 17 406 87 216 MBN8541789.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 390 120 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29730212 29730212 PRJNA546018_S_NODE_29810_length_288_cov_1.444934_g29485_i0 PRJNA546018 29810 288 1.444934 4.16140992 Polyangiaceae bacterium 2268199 Bacteria Bacteria 159 1.02e-44   NR HVR21206.1 2268199 g29485 i0 90 0.9375 90 9 93.8 0 270 1 248 337 HVR21206.1 right-handed parallel beta-helix repeat-containing protein [Polyangiaceae bacterium] diamond 270 159 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30187451 30187451 PRJNA546018_S_NODE_49572_length_215_cov_3.610390_g49247_i0 PRJNA546018 49572 215 3.61039 7.7623385 Myxococcia 32015 Bacteria Bacteria 97.1 4.69e-22   NR WP_293254146.1 1962667 g49247 i0 89.6 2.0093023255814 48 5 67 0 213 70 290 337 WP_293254146.1 DUF294 nucleotidyltransferase-like domain-containing protein [Nannocystis sp.] diamond 432 97.8 0.992842535787321 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
30235887 30235887 PRJNA546018_S_NODE_9512_length_563_cov_3.049801_g9193_i0 PRJNA546018 9512 563 3.049801 17.17037963 Myxococcota bacterium 2818507 Bacteria Bacteria 90.1 1.44e-19   NR MEE2828568.1 2818507 g9193 i0 52.8 0.474245115452931 89 42 47.4 0 541 275 30 118 MEE2828568.1 S-adenosylmethionine decarboxylase [Myxococcota bacterium] diamond 267 90.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30850995 30850995 PRJNA546018_S_NODE_49714_length_215_cov_1.779221_g49389_i0 PRJNA546018 49714 215 1.779221 3.82532515 Pseudomonadati 3379134 Bacteria Bacteria 108 1.75e-25   NR MBN8539685.1 2026735 g49389 i0 82.8 1.78604651162791 64 11 89.3 0 24 215 458 521 MBN8539685.1 tetratricopeptide repeat protein [Deltaproteobacteria bacterium] diamond 384 108 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32575847 32575847 PRJNA546018_S_NODE_48119_length_219_cov_1.746835_g47794_i0 PRJNA546018 48119 219 1.746835 3.82556865 Polyangiaceae bacterium 2268199 Bacteria Bacteria 107 1.75e-25   NR HEX6272685.1 2268199 g47794 i0 84.6 1.79452054794521 65 10 89 0 216 22 324 388 HEX6272685.1 right-handed parallel beta-helix repeat-containing protein [Polyangiaceae bacterium] diamond 393 107 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32795786 32795786 PRJNA546018_S_NODE_23400_length_331_cov_1.714815_g23075_i0 PRJNA546018 23400 331 1.714815 5.67603765 Myxococcaceae bacterium 2484252 Bacteria Bacteria 73.2 2.21e-12   NR HEX4621222.1 2484252 g23075 i0 43.4 0.897280966767372 99 50 87 2 312 25 161 256 HEX4621222.1 SDR family oxidoreductase [Myxococcaceae bacterium] diamond 297 73.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;