RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA546018" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA546018 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1786875 1786875 PRJNA546018_S_NODE_7002_length_674_cov_6.189233_g6711_i0 PRJNA546018 7002 674 6.189233 41.71543042 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 139 7.27e-36   NR KAH9254474.1 1357716 g6711 i0 65.6 0.427299703264095 96 31 41.8 2 203 484 219 314 KAH9254474.1 hypothetical protein BASA81_007587 [Batrachochytrium salamandrivorans] diamond 288 139 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
27172517 27172517 PRJNA546018_S_NODE_19262_length_370_cov_2.944984_g18937_i0 PRJNA546018 19262 370 2.944984 10.8964408 Lobulomycetales sp. 2058121 Fungi Fungi 81.6 3.76e-15   NR KAL3897607.1 2058121 g18937 i0 45.9 1.58918918918919 98 47 74.6 2 333 58 618 715 KAL3897607.1 MAG: hypothetical protein SGCHY_003302 [Lobulomycetales sp.] diamond 588 81.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
29793448 29793448 PRJNA546018_S_NODE_33171_length_270_cov_4.057416_g32846_i0 PRJNA546018 33171 270 4.057416 10.9550232 Powellomyces hirtus 109895 Fungi Fungi 44.7 0.0101   NR KAI8917104.1 109895 g32846 i0 36.1 0.8 72 38 75.6 3 212 9 74 141 KAI8917104.1 hypothetical protein DFJ77DRAFT_333702 [Powellomyces hirtus] diamond 216 44.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Powellomyces Powellomyces hirtus
30503562 30503562 PRJNA546018_S_NODE_1633_length_1440_cov_10.277012_g1108_i1 PRJNA546018 1633 1440 10.277012 147.9889728 Fungi 4751 Fungi Fungi 59.3 2.6e-5   NR KAI9024007.1 82268 g1108 i1 34.9 1.01666666666667 109 58 22.7 4 1322 996 6 101 KAI9024007.1 hypothetical protein DFJ74DRAFT_705748 [Hyaloraphidium curvatum] diamond 1464 59.7 0.993299832495812 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
31057745 31057745 PRJNA546018_S_NODE_5695_length_761_cov_5.104286_g5429_i0 PRJNA546018 5695 761 5.104286 38.84361646 Thoreauomyces humboldtii 1396496 Fungi Fungi 77.4 4.64e-12   NR KAJ3012438.1 1396496 g5429 i0 33.8 0.512483574244415 130 85 51.2 1 66 455 428 556 KAJ3012438.1 SPT3 Dosage dependent suppressor of Ty-induced promoter mutations-like protein, partial [Thoreauomyces humboldtii] diamond 390 77.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Thoreauomyces Thoreauomyces humboldtii
32480928 32480928 PRJNA546018_S_NODE_17479_length_392_cov_4.305136_g17154_i0 PRJNA546018 17479 392 4.305136 16.87613312 Piromyces finnis 1754191 Fungi Fungi 70.5 3.23e-11   NR ORX50324.1 1754191 g17154 i0 69.8 3.03826530612245 43 11 32.9 2 235 107 123 163 ORX50324.1 zf-CHY-domain-containing protein [Piromyces finnis] diamond 1191 70.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces finnis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;