RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA546018" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA546018 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20912809 20912809 PRJNA546018_S_NODE_20297_length_359_cov_1.822148_g19972_i0 PRJNA546018 20297 359 1.822148 6.54151132 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 110 6.960000000000001e-29   NR MFN4175223.1 2052176 g19972 i0 59 0.693593314763231 83 34 69.4 0 335 87 17 99 MFN4175223.1 lipase maturation factor family protein [Parachlamydiaceae bacterium] diamond 249 110 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28499234 28499234 PRJNA546018_S_NODE_14927_length_430_cov_4.967480_g14602_i0 PRJNA546018 14927 430 4.96748 21.360164 Chlamydiia bacterium 2052156 Bacteria Bacteria 83.2 2.19e-15   NR MCB1084891.1 2052156 g14602 i0 55.4 1.03255813953488 74 24 51.6 1 196 417 667 731 MCB1084891.1 outer membrane protein assembly factor BamA [Chlamydiia bacterium] diamond 444 83.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
30267820 30267820 PRJNA546018_S_NODE_48372_length_218_cov_3.210191_g48047_i0 PRJNA546018 48372 218 3.210191 6.99821638 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 101 4.01e-23   NR MFN4174447.1 2052176 g48047 i0 77.4 0.853211009174312 62 14 85.3 0 186 1 150 211 MFN4174447.1 histidine kinase dimerization/phospho-acceptor domain-containing protein [Parachlamydiaceae bacterium] diamond 186 101 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31879401 31879401 PRJNA546018_S_NODE_24297_length_324_cov_2.387833_g23972_i0 PRJNA546018 24297 324 2.387833 7.73657892 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 64.3 7.87e-11   NR MFN4174814.1 2052176 g23972 i0 53 0.611111111111111 66 30 61.1 1 207 10 1 65 MFN4174814.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 198 64.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;