RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA546018" and tax_phylum = "Aquificota"

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tax_superkingdom 1

tax_phylum 1

  • Aquificota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA546018 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27899003 27899003 PRJNA546018_S_NODE_60365_length_190_cov_2.806202_g60040_i0 PRJNA546018 60365 190 2.806202 5.3317838 Aquificaceae bacterium 2053503 Bacteria Bacteria 102 7.850000000000001e-26   NR MCY0866425.1 2053503 g60040 i0 89.7 0.91578947368421 58 6 91.6 0 3 176 65 122 MCY0866425.1 DUF4149 domain-containing protein [Aquificaceae bacterium] diamond 174 102 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae   Aquificaceae bacterium
28056901 28056901 PRJNA546018_S_NODE_31625_length_278_cov_3.156682_g31300_i0 PRJNA546018 31625 278 3.156682 8.77557596 Aquificaceae bacterium 2053503 Bacteria Bacteria 75.9 1.24e-13   NR MEZ0337372.1 2053503 g31300 i0 97.4 0.410071942446043 38 1 41 0 163 276 19 56 MEZ0337372.1 TIGR02556 family CRISPR-associated protein [Aquificaceae bacterium] diamond 114 75.9 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae   Aquificaceae bacterium
28436026 28436026 PRJNA546018_S_NODE_58746_length_196_cov_2.955556_g58421_i0 PRJNA546018 58746 196 2.955556 5.7928897600000004 Aquificota bacterium 2202151 Bacteria Bacteria 53.5 3.11e-6   NR QWK13902.1 2202151 g58421 i0 92.6 0.413265306122449 27 2 41.3 0 196 116 445 471 QWK13902.1 MAG: GspE/PulE family protein [Aquificota bacterium] diamond 81 53.5 1 Bacteria   Pseudomonadati Aquificota         Aquificota bacterium
30046165 30046165 PRJNA546018_S_NODE_44511_length_229_cov_2.535714_g44186_i0 PRJNA546018 44511 229 2.535714 5.80678506 Aquificaceae bacterium 2053503 Bacteria Bacteria 139 3.13e-40   NR MDM7267174.1 2053503 g44186 i0 100 0.995633187772926 76 0 99.6 0 228 1 9 84 MDM7267174.1 hypothetical protein [Aquificaceae bacterium] diamond 228 139 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae   Aquificaceae bacterium
30646405 30646405 PRJNA546018_S_NODE_44413_length_230_cov_0.869822_g44088_i0 PRJNA546018 44413 230 0.869822 2.0005906 Aquificaceae bacterium 2053503 Bacteria Bacteria 87.8 3.12e-18   NR HCO39438.1 2053503 g44088 i0 95.5 0.573913043478261 44 2 57.4 0 98 229 1 44 HCO39438.1 thiosulfohydrolase SoxB [Aquificaceae bacterium] diamond 132 87.8 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae   Aquificaceae bacterium
31436709 31436709 PRJNA546018_S_NODE_19776_length_364_cov_3.046205_g19451_i0 PRJNA546018 19776 364 3.046205 11.0881862 Aquificaceae bacterium 2053503 Bacteria Bacteria 187 1.2799999999999998e-55   NR HAV40633.1 2053503 g19451 i0 96.6 1.45054945054945 88 3 72.5 0 2 265 133 220 HAV40633.1 flagellar hook protein FlgE [Aquificaceae bacterium] diamond 528 187 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae   Aquificaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;