RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA546018" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA546018 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28151959 28151959 PRJNA546018_S_NODE_44645_length_229_cov_1.547619_g44320_i0 PRJNA546018 44645 229 1.547619 3.54404751 Micractinium sp. CCAP 211/92 554058 Plants Plants 43.9 0.0124   NR KAL4424952.1 554058 g44320 i0 32.8 1.51965065502183 58 32 76 1 11 184 373 423 KAL4424952.1 hypothetical protein ABPG77_009681 [Micractinium sp. CCAP 211/92] diamond 348 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92
30741382 30741382 PRJNA546018_S_NODE_44554_length_229_cov_2.053571_g44229_i0 PRJNA546018 44554 229 2.053571 4.70267759 Trebouxia sp. A1-2 2608996 Plants Plants 43.9 0.0115   NR KAA6423816.1 2608996 g44229 i0 64.3 0.366812227074236 28 10 36.7 0 11 94 250 277 KAA6423816.1 MAG: light-harvesting of photosystem I [Trebouxia sp. A1-2] diamond 84 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;