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contig_metadata

36 rows where analysis = "diamond", bioproject = "PRJNA543299" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 36 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA543299 · 36 ✖

analysis 1

  • diamond · 36 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17087142 17087142 PRJNA543299_P_NODE_21154_length_166_cov_0.871795_g20997_i0 PRJNA543299 21154 166 0.871795 1.4471797 Amycolatopsis sp. 37632 Bacteria Bacteria 54.3 3.84e-7   NR HET6502105.1 37632 g20997 i0 56.9 0.921686746987952 51 18 84.9 2 164 24 119 169 HET6502105.1 hypothetical protein [Amycolatopsis sp.] diamond 153 54.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp.
26856664 26856664 PRJNA543299_P_NODE_26221_length_161_cov_0.910714_g26064_i0 PRJNA543299 26221 161 0.910714 1.46624954 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 90.9 5.3e-20   NR MBV5322712.1 2497619 g26064 i0 87 2.57142857142857 46 6 85.7 0 4 141 19 64 MBV5322712.1 DUF3987 domain-containing protein [Ilumatobacteraceae bacterium] diamond 414 90.9 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium
27077902 27077902 PRJNA543299_P_NODE_25882_length_161_cov_0.910714_g25725_i0 PRJNA543299 25882 161 0.910714 1.46624954 Candidatus Planktophila sp. 2175601 Bacteria Bacteria 106 1.53e-25   NR MBP6148160.1 2175601 g25725 i0 100 0.987577639751553 53 0 98.8 0 1 159 127 179 MBP6148160.1 hypothetical protein [Candidatus Planktophila sp.] diamond 159 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae Candidatus Planktophila Candidatus Planktophila sp.
27299220 27299220 PRJNA543299_P_NODE_26123_length_161_cov_0.910714_g25966_i0 PRJNA543299 26123 161 0.910714 1.46624954 Actinomycetota bacterium 2900548 Bacteria Bacteria 110 2.8e-28   NR MEN9965541.1 2900548 g25966 i0 100 0.987577639751553 53 0 98.8 0 2 160 164 216 MEN9965541.1 hypothetical protein [Actinomycetota bacterium] diamond 159 110 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27362653 27362653 PRJNA543299_P_NODE_22203_length_165_cov_0.879310_g22046_i0 PRJNA543299 22203 165 0.87931 1.4508615 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 42 0.0203   NR HNV10618.1 2021380 g22046 i0 33.9 1.07272727272727 59 34 98.2 1 2 163 105 163 HNV10618.1 hypothetical protein [Propionibacteriaceae bacterium] diamond 177 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
27646768 27646768 PRJNA543299_P_NODE_24304_length_163_cov_0.894737_g24147_i0 PRJNA543299 24304 163 0.894737 1.45842131 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 47.4 2.72e-4   NR MDP6144319.1 2201156 g24147 i0 48.1 3.84662576687117 52 23 95.7 2 161 6 143 190 MDP6144319.1 PD-(D/E)XK nuclease family protein [Acidimicrobiales bacterium] diamond 627 47.4 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
27850713 27850713 PRJNA543299_P_NODE_22504_length_165_cov_0.879310_g22347_i0 PRJNA543299 22504 165 0.87931 1.4508615 Intrasporangiaceae 85021 Bacteria Bacteria 77.8 1.83e-15   NR WP_231961179.1 443156 g22347 i0 74.1 1.96363636363636 54 14 98.2 0 164 3 49 102 WP_231961179.1 PP2C family protein-serine/threonine phosphatase [Pedococcus dokdonensis] diamond 324 77.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Pedococcus Pedococcus dokdonensis
27867437 27867437 PRJNA543299_P_NODE_24485_length_163_cov_0.885965_g24328_i0 PRJNA543299 24485 163 0.885965 1.44412295 Streptomyces violaceusniger 68280 Bacteria Bacteria 54.3 1.02e-7   NR WP_078645968.1 68280 g24328 i0 56.1 0.754601226993865 41 18 75.5 0 16 138 43 83 WP_078645968.1 HNH endonuclease [Streptomyces violaceusniger] diamond 123 54.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces violaceusniger
27977089 27977089 PRJNA543299_P_NODE_23925_length_163_cov_0.894737_g23768_i0 PRJNA543299 23925 163 0.894737 1.45842131 Bacteria 2 Bacteria Bacteria 95.5 2.06e-23   NR HWJ98851.1 2201156 g23768 i0 87 1.98773006134969 54 7 99.4 0 2 163 2 55 HWJ98851.1 SRPBCC family protein [Acidimicrobiales bacterium] diamond 324 95.5 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28025521 28025521 PRJNA543299_P_NODE_21445_length_166_cov_0.871795_g21288_i0 PRJNA543299 21445 166 0.871795 1.4471797 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 107 1.47e-25   NR MBP6490144.1 2497619 g21288 i0 100 1.96987951807229 55 0 99.4 0 2 166 260 314 MBP6490144.1 hypothetical protein [Ilumatobacteraceae bacterium] diamond 327 107 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium
28151932 28151932 PRJNA543299_P_NODE_21525_length_166_cov_0.871795_g21368_i0 PRJNA543299 21525 166 0.871795 1.4471797 Actinomycetota bacterium 2900548 Bacteria Bacteria 100 6.93e-26   NR HAM21110.1 2900548 g21368 i0 94.5 0.993975903614458 55 3 99.4 0 165 1 38 92 HAM21110.1 hypothetical protein [Actinomycetota bacterium] diamond 165 100 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28292763 28292763 PRJNA543299_P_NODE_20346_length_167_cov_0.864407_g20189_i0 PRJNA543299 20346 167 0.864407 1.44355969 Actinomycetes 1760 Bacteria Bacteria 103 3.66e-24   NR WP_138316302.1 232537 g20189 i0 100 39.5209580838323 55 0 98.8 0 166 2 1000 1054 WP_138316302.1 glutamate synthase large subunit [Rhodoluna limnophila] diamond 6600 103 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila
28372684 28372684 PRJNA543299_P_NODE_25766_length_161_cov_0.910714_g25609_i0 PRJNA543299 25766 161 0.910714 1.46624954 Agromyces ramosus 33879 Bacteria Bacteria 57.4 3.5e-8   NR WP_130351098.1 33879 g25609 i0 71.8 2.18012422360248 39 11 72.7 0 43 159 145 183 WP_130351098.1 DedA family protein [Agromyces ramosus] diamond 351 57.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces ramosus
28387551 28387551 PRJNA543299_P_NODE_24266_length_163_cov_0.894737_g24109_i0 PRJNA543299 24266 163 0.894737 1.45842131 Bacillati 1783272 Bacteria Bacteria 43.5 0.00632   NR WP_257527422.1 2969407 g24109 i0 64.3 2.50306748466258 28 10 51.5 0 1 84 202 229 WP_257527422.1 RNA ligase family protein [Microbacterium sp. zg-YB36] diamond 408 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. zg-YB36
28419343 28419343 PRJNA543299_P_NODE_23966_length_163_cov_0.894737_g23809_i0 PRJNA543299 23966 163 0.894737 1.45842131 Actinomycetes 1760 Bacteria Bacteria 106 2.44e-25   NR WP_141789103.1 297536 g23809 i0 96.2 22.398773006135 53 2 97.5 0 161 3 39 91 WP_141789103.1 crotonyl-CoA carboxylase/reductase [Oryzihumus leptocrescens] diamond 3651 107 0.990654205607477 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Oryzihumus Oryzihumus leptocrescens
28436003 28436003 PRJNA543299_P_NODE_15306_length_192_cov_0.811189_g15149_i0 PRJNA543299 15306 192 0.811189 1.55748288 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 118 1.26e-32   NR HQZ35306.1 2497619 g15149 i0 98.4 1 64 1 100 0 1 192 47 110 HQZ35306.1 hypothetical protein [Ilumatobacteraceae bacterium] diamond 192 118 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium
28545731 28545731 PRJNA543299_P_NODE_20567_length_167_cov_0.864407_g20410_i0 PRJNA543299 20567 167 0.864407 1.44355969 Rhodoluna 529883 Bacteria Bacteria 108 7.98e-26   NR WP_038502617.1 529884 g20410 i0 98.2 3.95209580838323 55 1 98.8 0 166 2 330 384 WP_038502617.1 AMP-dependent synthetase/ligase [Rhodoluna lacicola] diamond 660 109 0.990825688073395 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
28593882 28593882 PRJNA543299_P_NODE_23967_length_163_cov_0.894737_g23810_i0 PRJNA543299 23967 163 0.894737 1.45842131 Actinomycetota bacterium 2900548 Bacteria Bacteria 110 1.88e-26   NR MSZ20701.1 2900548 g23810 i0 94.4 1.98773006134969 54 3 99.4 0 1 162 429 482 MSZ20701.1 ribulokinase [Actinomycetota bacterium] diamond 324 110 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28783062 28783062 PRJNA543299_P_NODE_13767_length_202_cov_1.000000_g13610_i0 PRJNA543299 13767 202 1 2.02 Actinomycetes bacterium 1883427 Bacteria Bacteria 85.5 9.62e-18   NR MEI8286280.1 1883427 g13610 i0 69.2 0.965346534653465 65 18 96.5 1 200 6 14 76 MEI8286280.1 tail fiber domain-containing protein [Actinomycetes bacterium] diamond 195 85.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
28941332 28941332 PRJNA543299_P_NODE_20988_length_166_cov_1.743590_g20831_i0 PRJNA543299 20988 166 1.74359 2.8943594 Actinomycetota bacterium 2900548 Bacteria Bacteria 87.4 7.87e-19   NR MSV74386.1 2900548 g20831 i0 89.8 7.08433734939759 49 5 88.6 0 166 20 270 318 MSV74386.1 malate dehydrogenase [Actinomycetota bacterium] diamond 1176 87.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29036028 29036028 PRJNA543299_P_NODE_24468_length_163_cov_0.885965_g24311_i0 PRJNA543299 24468 163 0.885965 1.44412295 Nigerium sp. 2042655 Bacteria Bacteria 77.8 4.65e-15   NR WP_347348852.1 2042655 g24311 i0 77.4 2.92638036809816 53 12 97.5 0 161 3 144 196 WP_347348852.1 glutamate-5-semialdehyde dehydrogenase [Nigerium sp.] diamond 477 77.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Nigerium Nigerium sp.
29067519 29067519 PRJNA543299_P_NODE_21488_length_166_cov_0.871795_g21331_i0 PRJNA543299 21488 166 0.871795 1.4471797 Actinomycetota bacterium 2900548 Bacteria Bacteria 92 6.96e-23   NR MEY4559967.1 2900548 g21331 i0 97.8 0.831325301204819 46 1 83.1 0 28 165 1 46 MEY4559967.1 hypothetical protein [Actinomycetota bacterium] diamond 138 92 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29177154 29177154 PRJNA543299_P_NODE_26169_length_161_cov_0.910714_g26012_i0 PRJNA543299 26169 161 0.910714 1.46624954 Rhodoluna 529883 Bacteria Bacteria 114 3.14e-28   NR WP_144239031.1 529884 g26012 i0 98.1 8.88819875776398 53 1 98.8 0 2 160 344 396 WP_144239031.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD [Rhodoluna lacicola] diamond 1431 115 0.991304347826087 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
29351642 29351642 PRJNA543299_P_NODE_22949_length_164_cov_0.886957_g22792_i0 PRJNA543299 22949 164 0.886957 1.45460948 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 58.9 5.18e-9   NR MFN2485673.1 2080302 g22792 i0 55.8 1.60975609756098 43 19 78.7 0 29 157 24 66 MFN2485673.1 HNH endonuclease signature motif containing protein [Acidimicrobiia bacterium] diamond 264 58.9 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
29477552 29477552 PRJNA543299_P_NODE_23790_length_163_cov_0.894737_g23633_i0 PRJNA543299 23790 163 0.894737 1.45842131 Prescottella equi 43767 Bacteria Bacteria 45.8 0.00104   NR MBM4646540.1 43767 g23633 i0 50 1.47239263803681 44 22 81 0 133 2 1 44 MBM4646540.1 tyrosine-type recombinase/integrase [Prescottella equi] diamond 240 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Prescottella Prescottella equi
29587114 29587114 PRJNA543299_P_NODE_23890_length_163_cov_0.894737_g23733_i0 PRJNA543299 23890 163 0.894737 1.45842131 Aurantimicrobium 1705353 Bacteria Bacteria 108 9.7e-27   NR WP_280797631.1 708131 g23733 i0 98.1 6.95705521472393 54 1 99.4 0 2 163 64 117 WP_280797631.1 TerC family protein [Aurantimicrobium minutum] diamond 1134 109 0.990825688073395 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aurantimicrobium Aurantimicrobium minutum
29603800 29603800 PRJNA543299_P_NODE_9790_length_238_cov_0.820106_g9633_i0 PRJNA543299 9790 238 0.820106 1.95185228 Propioniciclava soli 2775081 Bacteria Bacteria 43.5 0.0187   NR WP_232547187.1 2775081 g9633 i0 35.4 0.995798319327731 79 44 90.8 2 13 228 314 392 WP_232547187.1 hypothetical protein [Propioniciclava soli] diamond 237 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propioniciclava Propioniciclava soli
29920094 29920094 PRJNA543299_P_NODE_24811_length_162_cov_0.902655_g24654_i0 PRJNA543299 24811 162 0.902655 1.4623011 Candidatus Microthrix N/A Bacteria Bacteria 104 9.54e-26   NR WP_012224124.1 41949 g24654 i0 98.1 0.981481481481482 53 1 98.1 0 160 2 51 103 WP_012224124.1 MULTISPECIES: patatin-like phospholipase family protein [Candidatus Microthrix] diamond 159 104 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Microthrixaceae Candidatus Neomicrothrix  
30804593 30804593 PRJNA543299_P_NODE_20834_length_167_cov_0.864407_g20677_i0 PRJNA543299 20834 167 0.864407 1.44355969 uncultured Gordonia sp. 198437 Bacteria Bacteria 50.1 3.46e-5   NR WP_288337825.1 198437 g20677 i0 57.4 0.844311377245509 47 20 84.4 0 167 27 557 603 WP_288337825.1 hypothetical protein [uncultured Gordonia sp.] diamond 141 50.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia uncultured Gordonia sp.
30836183 30836183 PRJNA543299_P_NODE_6114_length_297_cov_0.979839_g5958_i0 PRJNA543299 6114 297 0.979839 2.91012183 unclassified Kitasatospora 2633591 Bacteria Bacteria 43.5 0.0349   NR WP_280692113.1 2633591 g5958 i0 48.2 0.565656565656566 56 23 56.6 2 237 70 231 280 WP_280692113.1 MULTISPECIES: UbiA family prenyltransferase [unclassified Kitasatospora] diamond 168 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora  
31609797 31609797 PRJNA543299_P_NODE_17576_length_179_cov_1.569231_g17419_i0 PRJNA543299 17576 179 1.569231 2.80892349 Bacteria 2 Bacteria Bacteria 86.3 5.86e-20   NR MBJ7459832.1 2732252 g17419 i0 91.7 3.21787709497207 48 4 80.4 0 177 34 76 123 MBJ7459832.1 50S ribosomal protein L24 [Thermoleophilaceae bacterium] diamond 576 86.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae   Thermoleophilaceae bacterium
31752961 31752961 PRJNA543299_P_NODE_21257_length_166_cov_0.871795_g21100_i0 PRJNA543299 21257 166 0.871795 1.4471797 Candidatus Nanopelagicales bacterium 2518612 Bacteria Bacteria 60.1 5.44e-9   NR MFN8172523.1 2518612 g21100 i0 75 1.44578313253012 40 10 72.3 0 45 164 61 100 MFN8172523.1 dihydrofolate reductase family protein [Candidatus Nanopelagicales bacterium] diamond 240 60.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales     Candidatus Nanopelagicales bacterium
32069357 32069357 PRJNA543299_P_NODE_20838_length_167_cov_0.864407_g20681_i0 PRJNA543299 20838 167 0.864407 1.44355969 Rhodoluna lacicola 529884 Bacteria Bacteria 72 4.26e-13   NR WP_038502101.1 529884 g20681 i0 91.9 0.664670658682635 37 3 66.5 0 57 167 1 37 WP_038502101.1 4-hydroxy-tetrahydrodipicolinate synthase [Rhodoluna lacicola] diamond 111 72 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
32385836 32385836 PRJNA543299_P_NODE_23059_length_164_cov_0.886957_g22902_i0 PRJNA543299 23059 164 0.886957 1.45460948 Actinomycetota bacterium 2900548 Bacteria Bacteria 100 2.659999999999999e-23   NR MSZ19515.1 2900548 g22902 i0 88.9 1.97560975609756 54 6 98.8 0 2 163 74 127 MSZ19515.1 alpha-hydroxy-acid oxidizing enzyme [Actinomycetota bacterium] diamond 324 100 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32575823 32575823 PRJNA543299_P_NODE_23959_length_163_cov_0.894737_g23802_i0 PRJNA543299 23959 163 0.894737 1.45842131 Corynebacterium riegelii 156976 Bacteria Bacteria 82.8 3.22e-19   NR WP_277099758.1 156976 g23802 i0 92.7 0.754601226993865 41 3 75.5 0 123 1 5 45 WP_277099758.1 sulfurtransferase TusA family protein [Corynebacterium riegelii] diamond 123 82.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium riegelii
32590587 32590587 PRJNA543299_P_NODE_25379_length_162_cov_0.876106_g25222_i0 PRJNA543299 25379 162 0.876106 1.41929172 Bacteria 2 Bacteria Bacteria 70.9 3.92e-13   NR HEY3831139.1 2080302 g25222 i0 64.2 10.8518518518519 53 18 98.1 1 1 159 4 55 HEY3831139.1 crossover junction endodeoxyribonuclease RuvC [Acidimicrobiia bacterium] diamond 1758 70.9 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;