RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA543299" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA543299 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26761276 26761276 PRJNA543299_P_NODE_21401_length_166_cov_0.871795_g21244_i0 PRJNA543299 21401 166 0.871795 1.4471797 Methanosarcina sp. 2213 Archaea Archaea 85.5 6.280000000000001e-19   NR HET8686576.1 2213 g21244 i0 79.6 0.975903614457831 54 10 97.6 1 3 164 51 103 HET8686576.1 ERF family protein [Methanosarcina sp.] diamond 162 85.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
27330880 27330880 PRJNA543299_P_NODE_22183_length_165_cov_0.879310_g22026_i0 PRJNA543299 22183 165 0.87931 1.4508615 Methanoregulaceae archaeon 2485498 Archaea Archaea 54.3 1.04e-6   NR MDD1710164.1 2485498 g22026 i0 47.2 1.92727272727273 53 28 96.4 0 164 6 49 101 MDD1710164.1 DEAD/DEAH box helicase [Methanoregulaceae archaeon] diamond 318 54.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
28499221 28499221 PRJNA543299_P_NODE_23147_length_164_cov_0.886957_g22990_i0 PRJNA543299 23147 164 0.886957 1.45460948 Methanosarcina sp. 2213 Archaea Archaea 62 8.76e-10   NR HET8686002.1 2213 g22990 i0 62.2 1.70121951219512 45 17 82.3 0 29 163 74 118 HET8686002.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein [Methanosarcina sp.] diamond 279 62 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;