RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA543299" and tax_clade = "Luna-1 subcluster"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Luna-1 subcluster · 4 ✖

bioproject 1

  • PRJNA543299 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28292763 28292763 PRJNA543299_P_NODE_20346_length_167_cov_0.864407_g20189_i0 PRJNA543299 20346 167 0.864407 1.44355969 Actinomycetes 1760 Bacteria Bacteria 103 3.66e-24   NR WP_138316302.1 232537 g20189 i0 100 39.5209580838323 55 0 98.8 0 166 2 1000 1054 WP_138316302.1 glutamate synthase large subunit [Rhodoluna limnophila] diamond 6600 103 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila
28545731 28545731 PRJNA543299_P_NODE_20567_length_167_cov_0.864407_g20410_i0 PRJNA543299 20567 167 0.864407 1.44355969 Rhodoluna 529883 Bacteria Bacteria 108 7.98e-26   NR WP_038502617.1 529884 g20410 i0 98.2 3.95209580838323 55 1 98.8 0 166 2 330 384 WP_038502617.1 AMP-dependent synthetase/ligase [Rhodoluna lacicola] diamond 660 109 0.990825688073395 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
29177154 29177154 PRJNA543299_P_NODE_26169_length_161_cov_0.910714_g26012_i0 PRJNA543299 26169 161 0.910714 1.46624954 Rhodoluna 529883 Bacteria Bacteria 114 3.14e-28   NR WP_144239031.1 529884 g26012 i0 98.1 8.88819875776398 53 1 98.8 0 2 160 344 396 WP_144239031.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD [Rhodoluna lacicola] diamond 1431 115 0.991304347826087 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
32069357 32069357 PRJNA543299_P_NODE_20838_length_167_cov_0.864407_g20681_i0 PRJNA543299 20838 167 0.864407 1.44355969 Rhodoluna lacicola 529884 Bacteria Bacteria 72 4.26e-13   NR WP_038502101.1 529884 g20681 i0 91.9 0.664670658682635 37 3 66.5 0 57 167 1 37 WP_038502101.1 4-hydroxy-tetrahydrodipicolinate synthase [Rhodoluna lacicola] diamond 111 72 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;