RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA543299" and tax_clade = "Candidatus Pacearchaeota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • Candidatus Pacearchaeota · 3 ✖

bioproject 1

  • PRJNA543299 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28846205 28846205 PRJNA543299_P_NODE_23908_length_163_cov_0.894737_g23751_i0 PRJNA543299 23908 163 0.894737 1.45842131 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 83.6 5.17e-17   NR MCK5602728.1 2026773 g23751 i0 70.4 1.98773006134969 54 16 99.4 0 163 2 569 622 MCK5602728.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 324 83.6 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
30394306 30394306 PRJNA543299_P_NODE_25893_length_161_cov_0.910714_g25736_i0 PRJNA543299 25893 161 0.910714 1.46624954 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 47 6.66e-5   NR MEM4271259.1 2026773 g25736 i0 65.5 0.540372670807453 29 10 54 0 159 73 66 94 MEM4271259.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 87 47 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
31135080 31135080 PRJNA543299_P_NODE_19435_length_170_cov_1.685950_g19278_i0 PRJNA543299 19435 170 1.68595 2.866115 root 1 Root_unresolved Root_unresolved 45.8 0.00109   NR MAG27506.1 2026773 g19278 i0 34.6 1.83529411764706 52 34 91.8 0 164 9 211 262 MAG27506.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 312 45.8 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;