RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA540466" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA540466 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28025453 28025453 PRJNA540466_S_NODE_34505_length_309_cov_2.118644_g33956_i0 PRJNA540466 34505 309 2.118644 6.54660996 Minisyncoccota bacterium 2053589 Bacteria Bacteria 55.8 2.3e-7   NR MDR3582048.1 2053589 g33956 i0 41.1 0.922330097087379 95 49 89.3 2 295 20 12 102 MDR3582048.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 285 55.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30520157 30520157 PRJNA540466_S_NODE_55313_length_253_cov_4.766667_g54764_i0 PRJNA540466 55313 253 4.766667 12.05966751 Minisyncoccota bacterium 2053589 Bacteria Bacteria 41.2 0.0306   NR MFA5132704.1 2053589 g54764 i0 62.5 0.379446640316206 32 12 37.9 0 36 131 41 72 MFA5132704.1 DnaJ domain-containing protein [Candidatus Paceibacterota bacterium] diamond 96 41.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;